Rex:

COOT->Extensions->Modeling...->Reorder Chains...

But be forewarned that if the PDB file has insertion residue numbering this 
process will strip the insertion residue character from the ATOM records, so 
the file will end up with multiple residues with the same apparent residue 
number.

Steven

From: Mailing list for users of COOT Crystallographic Software 
[mailto:[email protected]] On Behalf Of Rex Palmer
Sent: Tuesday, January 20, 2015 11:54 AM
To: [email protected]
Subject: Reordering chains in a pdb file

My protein has 4 separate chains A,B,C and D but the pdb file has the chains in 
order C,D,A,B. Is there any existing software that would rearrange my pdb file 
as A,B,C,D?

Rex Palmer
http://www.bbk.ac.uk/biology/our-staff/emeritus-staff

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