Hi Kenneth,  have you tried using sphere refinement?   It's useful for
residues that are non contiguous.
https://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/web/docs/coot.html#Sphere-Refinement

Sent from my phone
On Apr 24, 2015 3:48 PM, "Kenneth Satyshur" <[email protected]>
wrote:

>  See enclosed png. When I try to real space refine the histidine
> connected to a Zn metal, it gets sucked into the metal density. WHY? Am I
> missing a lib file? I can see the Zn, but coot does not. I cannot use this
> coot version anymore. There are too many errors in it.
>
> version 0.8.1
>
> REHEL 6.6
>
>
>  kas
>
>
>
>   Kenneth A. Satyshur, M.S., Ph.D.
>
> Senior Scientist
>
> University of Wisconsin-Madison
>
> Madison, Wisconsin, 53706
>
> 608-215-5207
>

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