Hi,
I currently run ccp4 version 7.0.028 on a Mac Air with OS X 10.11.6 and
experience no problems if start Coot from within qtRView (model and maps
are displayed correctly)
If a start Coot by itself and load a PDB model and then use "auto open
MTZ" and select the model in order to calculate the maps, it comes up
with the following:
/In /Applications/ccp4-7.0/share/guile/gtk-2.0/gtk.scm://
// 147: 0* [apply #<procedure #f args> ()]//
//In unknown file://
// ?: 1 [#<procedure #f args>]//
//In /Applications/ccp4-7.0/share/coot/scheme/coot-gui.scm://
// 750: 2* (let* ((active-mol-no #)) (if (not #) (begin #) (begin #)))//
// 754: 3 (if (not #) (begin #) (begin #))//
//In /Applications/ccp4-7.0/share/coot/scheme/refmac.scm://
// ...//
// 514: 4 (let* (# # # ...) (write-pdb-file imol pdb-in) ...)//
// 525: 5* [run-refmac-by-filename "coot-refmac/refmac-for-phases.pdb"
...]//
//In unknown file://
// ?: 6 (letrec # # # ...)//
//In /Applications/ccp4-7.0/share/coot/scheme/refmac.scm://
// ...//
// 241: 7 (let* (#) (local-format #t "INFO:: test-refmac-status: ~s~%"
...) ...)//
// 241: 8* [goosh-command "refmac5" () ...]//
//In /Applications/ccp4-7.0/share/coot/scheme/coot-utils.scm://
// 676: 9 (if (not #) (begin # 255) (let* # # #))//
//In unknown file://
// ...//
// ?: 10 [call-with-output-file
"refmac-from-coot-refmac-for-phases-0.log" ...]//
// ?: 11 (let* ((file #) (ans #)) (close-output-port file) ans)//
// ?: 12* [open-output-file "refmac-from-coot-refmac-for-phases-0.log"]//
// ?: 13 [open-file "refmac-from-coot-refmac-for-phases-0.log" "w"]//
//<unnamed port>: In procedure open-file in expression (open-file str
OPEN_WRITE)://
//<unnamed port>: Permission denied:
"refmac-from-coot-refmac-for-phases-0.log"/
Actually, I updated Quartz very recently and today, reinstalled both
Quartz and CCP4 in an attempt to solve this problem.....
Any ideas?
Regards
Jeroen
--
Dr.math. et dis. nat. Jeroen R. Mesters
Deputy, Senior Researcher & Lecturer
Program Coordinator /Infection Biology/
<http://www.uni-luebeck.de/studium/studiengaenge/infection-biology/introduction.html>
Institute of Biochemistry, University of Lübeck
Ratzeburger Allee 160, 23538 Lübeck, Germany
phone: +49-451-31013105 (secretariate -31013101)
fax: +49-451-31013104
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http://www.uni-luebeck.de/studium/studiengaenge/infection-biology
http://www.iobcr.org <Http://www.iobcr.org>
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and which will not, speak then to me who neither beg nor fear
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