On 29/01/2018 13:11, René Wintjens wrote:

I'll take a look for map-to-model-correlation function.

In the meantime, I wonder if simply the function (density-at-point) computed at the ligand coordinates on an omit map would be easier to compare the ligand fits to the density.


You could do that straightforwardly.  Use residue-info to return a list of 
atoms in the residue:

(let ((sum 0))
(for-each (lambda (atom) (let ((dv (apply density-at-point (cons (imol-refinement-map) (list-ref atom 2)))))) (set! sum (+ sum dv))) atoms)

  ..

   )

... or maybe you want some other map other than the refinement map. There is no function to return the "chosen" difference map.

Paul.

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