Dear Paul,

I am wondering what's wrong with the real space refine zone for prolines in 
Coot (7658)? There are some problem with my machine (Ubuntu 18.04), when I 
refine (real space refine zone) proline. Even though the proline fits into the 
density, sometimes the proline flips out of the density during refinement or 
bad refinement (bad bonds, bad angles, etc). The worse case is there is broken 
link between two prolines (as shown in the figure in dropbox).

https://www.dropbox.com/sh/vbzj17360nlbjhf/AADJorLpu3sGdkSoIoQq4kAsa?dl=0

Thanks.

Best regards
HK

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