On 18/10/2019 20:54, Robert A Grant wrote:
Recently I noticed that my installation of COOT can no longer fetch PDB files.
The program reports the following error:
PDB Accession Code: dps
(get-ebi-pdb "dps")
DEBUG:: in get-url-str: "dps"
"http://www.ebi.ac.uk/pdbe-srv/view/files/dps.ent"; pdb
(handle-read-draw-molecule-with-recentre "coot-download/dps.pdb.ent" 1)
INFO:: Reading coordinate file: coot-download/dps.pdb.ent
WARNING:: Error reading small-molecule cif "coot-download/dps.pdb.ent"
There was an error reading coot-download/dps.pdb.ent.
ERROR 44 READ: Non-existent or empty file.
There was a coordinates read error
This would appear to be because the //www.ebi.ac.uk/pdbe-srv site no longer
supports this feature.
Is there a way to fix this?
It's related to https. A fix is in the works, I think - I am not sure where it has percolated to - and it's
related to the curlew failure. Debugging network issues on other people's computers is tricky.
I think that 0.8.9.3-pre from my site works - maybe not curlew though.
Regards,
Paul.
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