On 2019-10-10, at 20:42, Daniel Larsson <[email protected]<mailto:[email protected]>> wrote:
On 10 Oct 2019, at 18:24, Paul Emsley <[email protected]<mailto:[email protected]>> wrote: On 10/10/2019 13:49, Paul Emsley wrote: On 09/10/2019 08:20, Daniel Larsson wrote: Hi, Is there an easy way to customize Coot so that the view is centered on the C3' atom instead of the P atom when navigating RNA (e.g. when using space/Shift-space or Ctrl-g)? Often the density at the P is the best, so it makes sense to use this as the default position for centering. But for me, it would make it much easier to identify which nitrogenous base belongs to the residue when quickly moving around a model if the focus would be on an atom in the ribose. C3' (or C1') are also closer to the mass center of the nucleotide. No, there is no way to specify this - sadly - seems like a good idea though. I will change it so that it preferentially looks for C1'. Should be done today. Done 8daf4187a3e19e0b8d8c3f074ddf0932df32381a https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/movies/c1-prime.ogv Fantastic! I’ll try it out as soon as I can. The recent nightly build of CCPEM shipped with the fix for focusing on the C1' atom when stepping through the structure. But one still lands on the P atom of nucleotides when using "Ctrl-g" (go to residue). For consistency, I think these two mechanisms should focus you on the same atom. Regards, Daniel När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/ E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1
