On 02/01/2020 16:21, SUBSCRIBE CCPEM Lei wrote:
I used coot to calculate the pore profile of a channel. It worked great.

Glad to hear it.

Then I wanted to make a figure using pymol with the small dots calculated by 
coot.
I found the output file hole_surface_dots.dat didn't seem to be a pdb file.
Is there any way to export the coordinates of the small dots as a pdb file?

Follow this thread:

https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1509&L=COOT&D=0&P=21343

The columns are

x y z r g b hexcol

Paul.

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