Dear Dmitry, I think I had a similar problem with weird voxel values and could not see anything in Coot until I normalised the map. If you open the map in coot inside Scipion (using the ccp4 protocol Coot refine) you have the option to normalise the map (clicked by default). In addition you will have a normalised map file as output in protocol/extra/ folder that you can take to use in Coot outside Scipion.
Best, Igor El jue., 13 feb. 2020 a las 14:11, Dmitry Semchonok (<[email protected]>) escribió: > Dear colleagues, > > We are doing the model building using COOT. > > We got our cryo-em map using SCIPION (running relion software inside the > SCIPION) > > > The problem is that when we open the map in COOT although it opens without > any error we see nothing. > > We checked the centering and magnification issues and this is not the case. > > The only difference we noticed is a very wide Map Histogram scale (in > COOT). > > > Does anyone know what can be the reason and how to fix that? > > > Thank you in advance. > > Sincerely, > Dmitry > > ######################################################################## > > To unsubscribe from the COOT list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1 > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1
