> On 2020-03-24, at 16:12, Paul Emsley <[email protected]> wrote: > > On 24/03/2020 15:09, Daniel Larsson wrote: >> I tried the latest CCPEM nightly build of coot and can no longer use the >> command line options. A command such as this: >> coot --dictionary ligands.cif --map map1.ccp4 --map map2.ccp4 --map3.pdb >> --em --pdb model1.pdb model2.pdb --command coot_render.py >> results in this: >> "WARNING! Malformed option - needs an argument: dictionary >> WARNING! Malformed option - needs an argument: command" >> The PDB files are loaded, but not the maps are not. >> Perhaps this is a bug in the CCPEM build, but I thought I’d ask here first. > > This happens for me too. Sigh. It's top of the bug list. I've been avoiding > it because it's ancient C code buried in directives. > > Paul.
Ok, good to know that you are aware of this. I guess I could deal with the file opening from my python script. How do I load a dictionary or CCP4-style map from a python script? Regards, Daniel När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/ E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1
