On 05/05/2020 14:47, Xavier Brazzolotto wrote:
I’ve recently installed Coot 0.9 from CCP4 7.1 us OSX Catalina.
The program works okay except for the glycan module :
Trying to add a « complex mammalian » glycan chain it stops at the
addition of the second residue with the following error message
In /Applications/ccp4-7.1/share/guile/gtk-2.0/gtk.scm:
147: 0* [apply #<procedure #f ()> ()]
In unknown file:
?: 1 [#<procedure #f ()>]
In /Applications/ccp4-7.1/share/coot/scheme/add-linked-cho.scm:
...
355: 2 (let* ((wm (matrix-state))) (set-matrix (/ wm 4)) ...)
360: 3* (let* # # # ...)
372: 4 (begin (begin (let* (#) (if # # #))))
...
387: 5 (let* ((start-pos-view #)) (process-tree parent tree ...) ...)
388: 6* [process-tree ("A" 106 "") (# # #) ...]
317: 7 (cond ((null? tree) (quote ())) ((list? #) (let # #)) (else
(let* # #)))
...
325: 8 [cons ("A" 531 "") ...
326: 9* [process-tree ("A" 531 "") ((# #) ("ALPHA1-6" . "FUC")) ...]
317: 10 (cond ((null? tree) (quote ())) ((list? #) (let # #)) (else
(let* # #)))
320: 11 (let ((part-1 #) (part-2 #)) (cons part-1 part-2))
320: 12* [process-tree ("A" 531 "") (("BETA1-4" . "NAG") (# # #
...)) ...]
317: 13 (cond ((null? tree) (quote ())) ((list? #) (let # #)) (else
(let* # #)))
324: 14 (let* ((new-res #)) (cons new-res (process-tree new-res #
proc-func)))
324: 15* [add-linked-residue-add-cho-function 0 ("A" 531 "")
("BETA1-4" . "NAG")]
In unknown file:
?: 16 (letrec (# #) (if # # #))
In /Applications/ccp4-7.1/share/coot/scheme/add-linked-cho.scm:
...
291: 17 (begin # # # ...)
297: 18* [delete-residue-by-spec ("A" 532 "")]
/Applications/ccp4-7.1/share/coot/scheme/add-linked-cho.scm:297:31: In
procedure delete-residue-by-spec in expression (delete-residue-by-spec
preped-new-res-spec):
/Applications/ccp4-7.1/share/coot/scheme/add-linked-cho.scm:297:31:
Wrong number of arguments to #<procedure delete-residue-by-spec (imol
spec)>
Hi Xavier,
Thanks for the bug report.
Line 297 of /Applications/ccp4-7.1/share/coot/scheme/add-linked-cho.scm
should read:
(delete-residue-by-spec imol preped-new-res-spec)
@Charles, I presume that you can fix that without a patch. I've pushed a
commit.
Paul.
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