Hi Mateo, The restraint file for DGL in the dictionary was wrong and the chirality of the CA was not forced into the D-chirality. The attached restraint file should work. Just replace the one you have.
Cheers, Robbie > -----Original Message----- > From: Mailing list for users of COOT Crystallographic Software > <COOT@JISCMAIL.AC.UK> On Behalf Of Mateo Seoane Blanco > Sent: Wednesday, June 3, 2020 18:11 > To: COOT@JISCMAIL.AC.UK > Subject: DGL (D-glutamic acid) adds a L-glutamic acid > > Dear all, > > I tried to add a D-glutamic acid (3-letter-code: DGL) through the "Add Other > Solvent Molecules" feature. However, the molecule had the L-glutamic acid > chirality. In the attached picture, you can see both the DGL and the GLU (L- > glutamic acid) have L-chirality. I'm not sure if this is a pdb problem or a > coot > problem. Can someone look at it and fix it? > > All the best > > Mateo > -- > Mateo Seoane Blanco > PhD candidate | Dept. of Macromolecular Structures - Lab 20.B Centro > Nacional de Biotecnología - CSIC C/ Darwin 3, Madrid 28049, Spain > Tel.: (+34) 91 585 4517 | http://www.cnb.csic.es/index.php/en/ > > ############################################################### > ######### > > To unsubscribe from the COOT list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1 > > This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
DGL.cif
Description: DGL.cif
