I think the simplest way is to install the last available WinCoot 0.8x installer, then unpack 0.9 in that directory.
Best, -da On Fri, Jun 26, 2020 at 10:59 AM Aleksandr Sverzhinsky < [email protected]> wrote: > Thank you, that confirms that I'm using it as intended. Pardon the naive > question, but how do I get the dictionary from the old coot or from phenix? > > Aleksandr > > On Thu, 25 Jun 2020 20:51:21 +0200, Bernhard Lohkamp < > [email protected]> wrote: > > >Hello, > > > >On 25/06/2020 18:05, Aleksandr Sverzhinsky wrote: > >> Hello, > >> > >> I downloaded the WinCoot 0.9 beta2 folder to my C:\ directory as was > done using the WinCoot 0.8.9.3 installer. Since there isn't an installer > for this version, I don't have the shortcuts automatically created, but I > found the wincoot64.bat file. Is this the correct way to install WinCoot > 0.9? > > > >Yes and no. WinCoot 0.9 beta (2) is not an installer but just a zip > >archive, so it will just unpack all (WinCoot) files. You run it by > >running the wincoot64.bat file (or a link to it - or edit the old links > >to point to this new bat file). > > > >> Now when I try real space refinement I get the error "Warning: > Refinement setup failure. Failed to find restraints for: ALA"; this happens > for all residues. Any help is appreciated. > > > >This can be expected especially if you dont have CCP4 installed. The > >current archive (!) ships without the dictionary so you will need to get > >this form elsewhere (old Coot, Phenix, CCP4). Maybe I should add some > >more instructions on this and/or add the dictionary... Maybe for 0.9 > >(still likely to be without an installer though). Too many covid-19 > >issues to deal with first though... > > > >HTH!? > > > >Stay safe, > > > >B > > > >-- > >*************************************************** > > > >Dr. Bernhard Lohkamp | Associate Professor/Lektor/Docent > > > >Div. Molecular Structural Biology/Biomedicum D9 > >Dept. of Medical Biochemistry and Biophysics (MBB) | > >Karolinska Institutet > >SE-171 77 Stockholm > >Sweden > >+46 8 52487055 > >[email protected] | ki.se > > > > > >När du skickar e-post till Karolinska Institutet (KI) innebär detta att > KI kommer att behandla dina personuppgifter. Här finns information om hur > KI behandlar personuppgifter< > https://ki.se/medarbetare/integritetsskyddspolicy>. > > > > > >Sending email to Karolinska Institutet (KI) will result in KI processing > your personal data. You can read more about KI’s processing of personal > data here<https://ki.se/en/staff/data-protection-policy>. > > > >######################################################################## > > > >To unsubscribe from the COOT list, click the following link: > >https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 > > > >This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ > > ######################################################################## > > To unsubscribe from the COOT list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 > > This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
