Hey all, I'm trying to use PyMol's matrix_copy command to align some PDB/CCP4 map pairs, and I ran through the first example outlined here: https://pymolwiki.org/index.php/Matrix_Copy, which fetches two PDBs/maps, 1rx1 and 3dau, aligns the 1rx1 PDB to 3dau, and then matrix_copy's the 1rx1 map to the aligned 1rx1 PDB.
The resulting maps look well-aligned in Pymol, but when I save these maps as .ccp4 files and load them into Coot, Coot doesn't seem to register the movement of the 1rx1 map. I chatted with Schrodinger about this and they suspect that Coot is not reading the skew transformation flags SKWMAT and SKWTRN that are written by Pymol, so the map stays in its original, unaligned position. I was wondering if anyone has run into this same issue, and whether there is an easy fix. Thanks! ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
