Hi Paul
Thanks a lot.
Yes, I could have done the fitting on COOT :-)
I can see these options under "Edit". But I am still struggling.
Let me clarify, I have modelled 10 A-form RNA chains, chain A, B,
........... Now I want to merge all chains into one chain , for example
into chain A which I can do. But I don't know how to renumber residues
from 1 to 207 (total 207-nts) under chain A which are at the moment
assigned under multiple chains.
I can't find the options to merge 1-50 from A, 51-90 from B and so
on....
Can I have a little bit more help, please?
Many thanks
Saif
On 2021-03-19 16:24, Paul Emsley wrote:
On 19/03/2021 15:27, M.S. Islam wrote:
I have done rigid body fitting of a couple of chains of "A form RNA"
into an EM map using Chimera.
Why not do it in Coot? Or, put it another way: what does Chimera give
you for rigid body fitting that Coot does not?
Now I intend to join the chains and renumber the residues according to
RNA sequence on COOT.
OK.
Could anyone please share their experience of how to do this on COOT?
Merge Molecules, Change Chain IDs and Renumber Residues are Edit menu
items.
Paul.
--
Md. Saiful Islam, DPhil
MRC Toxicology Unit, University of Cambridge
Tennis Court Road, CB2 1QR
M: 07715313583
https://www.mrc-tox.cam.ac.uk/sd-specialities/macfarlane-group-member
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