Sorry Paul for not putting it more clearly. After running Refmac5 from CCP4i2, I open the mtz file and pdb in COOT. There I get a warning message (Picture attached). I can get this off if I turn off the run Molprobity option in CCP4i2. I was just wondering if I can get any clue to handle this warning in Coot. Or, I should not bother about it.
Cheers Prasun [image: image.png] PRASUN (ASHOKA) Desire + stability = Resolution Resolution + Hard work = Success On Wed, Nov 3, 2021 at 10:41 PM Paul Emsley <[email protected]> wrote: > > On 03/11/2021 22:28, prasun kumar wrote: > > > > > > I have a structure that has a lot of D-amino acids. When I open the > > mtz and pdb > open it in Coot you mean? > > it shows me C-beta outlier warning (Molprobity Warnig). > Coot doesn't do that. Are you talking about some other program? > > I have also downloaded D-amino acids peptides and corresponding mtz > > files from the PDB and got similar warnings. > > I don't follow what you're doing. Coot doesn't run molprobity C-beta > analysis (it has its own). > > Paul. > > > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
