On 16/11/2022 17:39, Xavier Brazzolotto wrote: > > Hello, > > I’ve noticed 2 issues in the recent update of coot (v0.9.8.5 from > CCP4i) on an Intel mac updated to Ventura (13.0.1). I did not test on > Linux. > > * When I delete a molecule, my Coot/X11 window « disappears ». It is > not closed/killed but somehow minimized. I can get it back from my > dock, but a bit annoying. > > > Here’s what the console says. > > *(set-delete-residue-mode)* > > (2) " O5 "/1/chainid="A"/625/FUC, occ: 1.000 with B-factor: 66.076 > element: " O" at (26.959,-34.446,11.593) : 0.132 > > INFO:: backup file name > coot-backup/_Users_xbrazzolotto_Desktop_Crystallography_20221116_MR37216_MR-CoX_Phenix_MR372016_20221116_refine_3-coot-1.pdb_Wed_Nov_16_18:30:17_2022_modification_11.pdb.gz > > *(delete-residue 2 "A" 625 "")* > > *(clear-pending-delete-item)* > > Pending Picks Cleared > > *(delete-residue-by-atom-index 2 4280 1)* > > debug:: g.safe_scheme_command() with command post-manipulation-hook > >
I have not heard of that before. > * When I build sugar chains with the N-linked Glycan module, they > are not building correctly. It looks like it messes up with the > wrong atom for linking. > > I am part-way through a fix for this. It is high priority and will require a new release. Paul. ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
