Hi Hari, To make it easy on Macs, we usually download and install CCP4, which comes with pre-compiled binaries for coot as well. In terms of size of the package it is an overkill but it is usually straight forward to install and it also provides a lot of other useful programs. You could try under Linux.
Cheers, christian From: Mailing list for users of COOT Crystallographic Software <COOT@JISCMAIL.AC.UK> on behalf of hari jayaram <hari...@gmail.com> Date: Wednesday, May 24, 2023 at 09:24 To: COOT@JISCMAIL.AC.UK <COOT@JISCMAIL.AC.UK> Subject: [EXTERNAL] Re: (Re)beginner question about coot binary version on Linux Ubuntu Hi All I am making some progress--but still cant get any of the binaries working I have the openssl libraries installed but still get the following error with coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python Thanks for your help Hari "hari@LT-Hari-Linux:/usr/lib/x86_64-linux-gnu$ ~/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/bin/coot /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin: libcrypto.so.1.1: version `OPENSSL_1_1_0' not found (required by /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4) /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin: /lib/libssl.so.1.1: version `OPENSSL_1_1_1' not found (required by /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4) /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin: /lib/libssl.so.1.1: version `OPENSSL_1_1_0' not found (required by /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4) . ------ Coot crashed - trying to diagnose ----- ldd -r on guile gives: linux-vdso.so.1 (0x00007ffdbdfae000) libguile.so.17 => /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libguile.so.17 (0x00007f6d85ccc000) libc.so.6 (0x00007f6d85aa4000) libgmp.so.10 => /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libgmp.so.10 (0x00007f6d85a2b000) libcrypt.so.1 (0x00007f6d859ef000) libm.so.6 (0x00007f6d85908000) libltdl.so.3 => /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libltdl.so.3 (0x00007f6d858fd000) libpthread.so.0 (0x00007f6d858f8000) /lib64/ld-linux-x86-64.so.2 (0x00007f6d85dd2000) libdl.so.2 (0x00007f6d858f3000) Guile 1.8.8 Copyright (c) 1995, 1996, 1997, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation Guile may be distributed under the terms of the GNU General Public Licence; certain other uses are permitted as well. For details, see the file `COPYING', which is included in the Guile distribution. There is no warranty, to the extent permitted by law. catching the crash log: coot-exe: "/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin" /usr/bin/ls -rwxr-xr-x 1 hari hari 423402112 Mar 10 2022 /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin coot-version: /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin: libcrypto.so.1.1: version `OPENSSL_1_1_0' not found (required by /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4) /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin: /lib/libssl.so.1.1: version `OPENSSL_1_1_1' not found (required by /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4) /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin: /lib/libssl.so.1.1: version `OPENSSL_1_1_0' not found (required by /home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4) platform: /usr/bin/uname Linux LT-Hari-Linux 5.15.0-56-generic #62-Ubuntu SMP Tue Nov 22 19:54:14 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux core: #f No core file found. No debugging " On Tue, May 23, 2023 at 9:13 PM hari jayaram <hari...@gmail.com<mailto:hari...@gmail.com>> wrote: Hi All I want to get back to using coot to build some models after a gap of 8 years. I have access to a Linux laptop and can put any OS version on it. I was wondering what the easiest way forward is —get the most recent Ubuntu and pull the latest binary ( 0.9.8.6 with binary for 20.04) or put the iso that coot was built for (20.04) on the laptop and start using it. Asking because I just tried using the newest mint distro ( Mint 21.1 Vera) and one of the binaries (coot-Linux-x86_64-scientific-linux-7.6-gtk2-python) and it runs aground without OpenSSL and ldap.so versions are being mismatched. When I switched to coot-0.9.8-binary-Linux-x86_64-ubuntu-20.04.4-python-gtk2 then it complained of a version mismatch for libssl.so.1.1 Thanks for your help in advance Hari ________________________________ To unsubscribe from the COOT list, click the following link: Bad URL Removed - see why - https://ees.sps.nih.gov/services/Pages/Anti-Virus.aspx?SUBED1=COOT&A=1<Bad%20URL%20Removed%20-%20see%20why%20-%20https:/ees.sps.nih.gov/services/Pages/Anti-Virus.aspx?SUBED1=COOT&A=1> CAUTION: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and are confident the content is safe. ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
