Hi, I have a sugar ligand with a Sia linked alpha 23 to Gal. Refinement with Refmac of phenix works and the link is recognized from the monomer dictionary. After opening in Coot all intersugarbonds/links are shown properly. Realspace refinement works for the other bonds, but the Sia Gal bond gets broken and the SIA is pushed away. The distance increases to about 3Ang. Looks like they are treated as not connected and this is the antibump distance? Taken into account that this is a standard link from the monomer library I would have suspected Coot recognizes that link automatically. What is the source for that behaviour and do I need to supply an additional dictionary for this link?
Thanks and Best Christian ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
