Hi Marko, I meant: you asked for an example, and pandda.inspect is an example. HTH
Sent from tiny silly touch screen ________________________________ From: Marko Hyvonen <mh...@cam.ac.uk> Sent: Friday, 31 May 2024 17:13 To: COOT@JISCMAIL.AC.UK Subject: Re: [COOT] Custom pop-up windows Yes, I know Frank, but wanted to have something standalone for non-pandda-enabled (is that a word?) projects and including not just “Ligands” or “events”, but any attention-seeking site in my structure. If your guys can help to pull out the bit of code that does panda-inspect, would be a step forward. Paul, Eta, yes, I know Ctrl-G, but I still need to type the residues. I am hoping to have something that does not require me (or someone else) to recall what and where to check. With tens of structures in some cases, with 8 active sites, 4 allosteric sites, crappy bits to check, my old brain needs a “check list” to click through to make sure I i) check all the sites and ii) don’t spend extra time doing navigating rather than staring at the density. If I could just hit a space bar to flick through that list (like happens with “Go to (Next) Ligand” button), even better. Cheers, Marko From: Frank Von Delft <frank.vonde...@cmd.ox.ac.uk> Sent: Friday, May 31, 2024 11:17 AM To: Marko Hyvonen <mh...@cam.ac.uk> Subject: Re: [COOT] Custom pop-up windows panda.inspect does this Sent from tiny silly touch screen ________________________________ From: Marko Hyvonen <mh...@cam.ac.uk<mailto:mh...@cam.ac.uk>> Sent: Friday, 31 May 2024 09:07 To: COOT@JISCMAIL.AC.UK<mailto:COOT@JISCMAIL.AC.UK> Subject: [COOT] Custom pop-up windows Hello all, Would anyone have a template/example to create a custom pop-up window (a bit like “Go to atom….” one) for Coot? We’d like to have something to help to browse through a large number of sizeable structures (oligomeric protein, several ligand sites, problematic loops, fair few other sites of “interest”) as using Go To Atom selection gets a little tiring after a while. What I’d like to have is · a custom menu item in Coot · that pops up a new window · with a list of all the available molecules (and maps, ideally) · and buttons to navigate different site (defined by residues, for example). A bit like a customised “Go to atom…” navigation window, if you like: “Browse the sites of interest” I have managed creation of a custom menus with a scheme script on startup, but this pop-up window idea has resisted my poor scripting/programming skills. Any advice & help much appreciated. Cheers, Marko --------- Marko Hyvönen Department of Biochemistry University of Cambridge mh...@cam.ac.uk<mailto:mh...@cam.ac.uk> https://hyvonen.bioc.cam.ac.uk<https://hyvonen.bioc.cam.ac.uk/> @HyvonenGroup ________________________________ To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 ________________________________ To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
