Thanks Tim! ...but
> brew install dwarfutils ==> Downloading https://formulae.brew.sh/api/formula.jws.json ==> Downloading https://formulae.brew.sh/api/cask.jws.json Warning: dwarfutils 2.0.0 is already installed and up-to-date. To reinstall 2.0.0, run: brew reinstall dwarfutils If I then attempt running coot, the error continues being the same as before. So, in my case this doesn’t seem to do the trick. I also tried following the suggested option of reinstalling dwarfutils…..which gives a fatal error when compiling (just the last bit copied: getopt.cc:27:10: fatal error: 'cstring' file not found 27 | #include <cstring> | ^~~~~~~~~ 1 error generated. make[1]: *** [getopt.lo] Error 1 make[1]: *** Waiting for unfinished jobs.... libtool: compile: clang++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.15\" "-DPACKAGE_STRING=\"coot 1.1.15\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.15\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_CXX11=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" -DHAVE_RSVG=1 -I. -I/opt/homebrew/opt/clipper4coot/fftw2/include -g -O2 -Wall -Wno-unused -std=c++17 -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.cc -o getopt1.o >/dev/null 2>&1 mv -f .deps/getopt1.Tpo .deps/getopt1.Plo make: *** [all-recursive] Error 1 > On 28 May 2025, at 11:20 AM, Stachowski, Tim <[email protected]> > wrote: > > Alejandro – I was able to fix this last week by installing the missing > package `brew install dwarfutils` > > Best > > Tim > > > > -- > Tim Stachowski, PhD > St. Jude Children’s Research Hospital > > I will be traveling and unable to answer emails from June 14 – July 7 > > > From: Mailing list for users of COOT Crystallographic Software > <[email protected] <mailto:[email protected]>> on behalf of Alejandro > Buschiazzo <[email protected] <mailto:[email protected]>> > Date: Wednesday, May 28, 2025 at 9:17 AM > To: [email protected] <mailto:[email protected]> <[email protected] > <mailto:[email protected]>> > Subject: Trouble installing coot 1.1 in MacOS > > Caution: External Sender. Do not open unless you know the content is safe. > > Hello > > Working on MacOS Sequoia (15.5) > > > After running > > > brew install brewsci/bio/coot > > I attempt launching coot, and get this error: > > dyld[49303]: Library not loaded: > /opt/homebrew/opt/dwarfutils/lib/libdwarf.0.dylib > Referenced from: <4CA23924-D089-3ADF-A5EF-DECA0F105599> > /opt/homebrew/Cellar/coot/1.1.15/libexec/MacCoot > Reason: tried: '/opt/homebrew/opt/dwarfutils/lib/libdwarf.0.dylib' (no such > file), > '/System/Volumes/Preboot/Cryptexes/OS/opt/homebrew/opt/dwarfutils/lib/libdwarf.0.dylib' > (no such file), '/opt/homebrew/opt/dwarfutils/lib/libdwarf.0.dylib' (no such > file), '/opt/homebrew/Cellar/dwarfutils/2.0.0/lib/libdwarf.0.dylib' (no such > file), > '/System/Volumes/Preboot/Cryptexes/OS/opt/homebrew/Cellar/dwarfutils/2.0.0/lib/libdwarf.0.dylib' > (no such file), '/opt/homebrew/Cellar/dwarfutils/2.0.0/lib/libdwarf.0.dylib' > (no such file) > /opt/homebrew/bin/coot: line 7: 49303 Abort trap: 6 > ${exec_prefix}/libexec/MacCoot "$@" > > Thanks in advance for any help! > > -- > Alejandro Buschiazzo, PhD > Associate Professor > Laboratory of Molecular & Structural Microbiology > Institut Pasteur de Montevideo > Mataojo 2020 > Montevideo 11400 > URUGUAY > Phone: +598 25220910 ext. 120 > Fax: +598 25224185 > https://pasteur.uy/en/laboratories/molecular-and-structural-microbiology/ > > > To unsubscribe from the COOT list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 > > > > Email Disclaimer: www.stjude.org/emaildisclaimer > <http://www.stjude.org/emaildisclaimer> > Consultation Disclaimer: www.stjude.org/consultationdisclaimer > <http://www.stjude.org/consultationdisclaimer> ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
