Does glxgears work?
If yes, then the problem is more towards my end. If no, then the issues
is with the OS/XQuartz.
Paul.
I had not heard of Tahoe until this email.
On 23/09/2025 09:04, Xavier Brazzolotto wrote:
--
Others have a similar issue with Coot & macOS Tahoe...
https://discussions.apple.com/thread/256140259?sortBy=rank
Unfortunately, it was not reported on the coot mailing list.
Le 21 sept. 2025 à 09:07, Xavier Brazzolotto <[email protected]>
a écrit :
Dear coot users, Dear Paul
I’ve just updated to macOS 26 (Tahoe)
Unfortunately, I have a bug when launching « old » coot (0.9.8.96 -
CCP4-9 version).
Is anyone experiencing the same issue?
I’ve tried to reinstall XQuartz and CCP4, but I’m still facing the
same error message.
The program 'coot-bin' received an X Window System error.
This probably reflects a bug in the program.
The error was 'BadValue (integer parameter out of range for operation)'.
(Details: serial 310 error_code 2 request_code 129 minor_code 2)
(Note to programmers: normally, X errors are reported asynchronously;
that is, you will receive the error a while after causing it.
To debug your program, run it with the --sync command line
option to change this behavior. You can then get a meaningful
backtrace from your debugger if you break on the gdk_x_error()
function.)
. ------ Coot crashed - trying to diagnose -----
Guile 1.8.8
Copyright (c) 1995, 1996, 1997, 2000, 2001, 2002, 2003, 2004, 2005,
2006, 2007, 2008 Free Software Foundation
Guile may be distributed under the terms of the GNU General Public
Licence;
certain other uses are permitted as well. For details, see the file
`COPYING', which is included in the Guile distribution.
There is no warranty, to the extent permitted by law.
catching the crash log:
coot-exe: "/Applications/ccp4-9/coot_py2/libexec/coot-bin"
/bin/ls
-rwxr-xr-x@ 1 root admin 9356184 Apr 27 19:06
/Applications/ccp4-9/coot_py2/libexec/coot-bin
coot-version:
/Applications/ccp4-9/coot_py2/libexec/coot-bin
Builder_info: CCP4, Oxfordshire, UK
Enabled: Enhanced-ligand-tools C++-11 Threads Boost-based-thread-pool
Goocanvas GSL LibCurl
Binary type: Darwin-MacOSX-11.7.10-x86_64-python-gtk2
git commit: 50638a38145722303017be802622d65d83bd7f66
Builder_info: CCP4, Oxfordshire, UK
[with python 2.7.16 embedded]
[with guile 1.8.8 embedded]
0.9.8.96 (revision-count 10988)
platform:
/usr/bin/uname
Darwin GRE073859.local 25.0.0 Darwin Kernel Version 25.0.0: Mon Aug
25 21:17:51 PDT 2025; root:xnu-12377.1.9~3/RELEASE_ARM64_T6020 x86_64
core: #f
No core file found. No debugging
Fortunately, new coot (homebrew) seems to work even if I am still not
used to it yet, and I miss the carbohydrate module.
Cheers
Xavier
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