On Oct 10, 2012, at 10:03 AM, "Wu, Stephen T., Ph.D." <[email protected]> wrote: > I had similar errors... I tried the following in iterative fashion: > 1. run maven install from the root ctakes directory and the projects that > had problems
You should definitely not run `mvn install`. That will end up putting SNAPSHOTs in your local Maven repository that in my experience will almost certainly get out of sync with the current code. In fact, if you've accidentally run `mvn install`, I highly recommend removing those entirely from your local repository: rm -rf ~/.m2/repository/org/apache/ctakes/ Steve > 2. try to maven->update dependencies and maven->update project > configuration on projects that had problems > > Eventually the errors went away. Then I had to do another maven install on > the root directory in order to get the types to actually show up in imports. > > stephen > > > On 10/10/12 10:51 AM, "Dmitriy Dligach" > <[email protected]> wrote: > >> Sorry. Here it is: >> >> >> [INFO] >> ------------------------------------------------------------------------ >> [INFO] Reactor Summary: >> [INFO] >> [INFO] cTAKES ............................................ SUCCESS [0.496s] >> [INFO] Apache cTAKES common type system .................. SUCCESS [5.212s] >> [INFO] Apache cTAKES utils ............................... SUCCESS [0.255s] >> [INFO] Apache cTAKES core ................................ SUCCESS [0.312s] >> [INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [0.240s] >> [INFO] Apache cTAKES chunker ............................. SUCCESS [0.267s] >> [INFO] Apache cTAKES document preprocessor ............... SUCCESS [0.404s] >> [INFO] Apache cTAKES dictionary lookup ................... SUCCESS [0.789s] >> [INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [0.194s] >> [INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [0.234s] >> [INFO] Apache cTAKES named entity contexts ............... SUCCESS [0.185s] >> [INFO] Apache cTAKES Constituency Parser ................. SUCCESS [11.004s] >> [INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [2.009s] >> [INFO] Apache cTAKES Drug NER ............................ SUCCESS [3.798s] >> [INFO] Apache cTAKES Side Effects ........................ SUCCESS [2.474s] >> [INFO] Apache cTAKES Smoking Status ...................... FAILURE [0.326s] >> [INFO] Apache cTAKES Dependency Parser ................... SKIPPED >> [INFO] Apache cTAKES Relation Extractor .................. SKIPPED >> [INFO] Apache cTAKES Assertion ........................... SKIPPED >> [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED >> [INFO] Apache cTAKES Pad Term Spotter .................... SKIPPED >> [INFO] >> ------------------------------------------------------------------------ >> [INFO] BUILD FAILURE >> [INFO] >> ------------------------------------------------------------------------ >> [INFO] Total time: 28.930s >> [INFO] Finished at: Wed Oct 10 11:50:48 EDT 2012 >> [INFO] Final Memory: 20M/202M >> [INFO] >> ------------------------------------------------------------------------ >> [ERROR] Failed to execute goal >> org.codehaus.mojo:exec-maven-plugin:1.2.1:java >> (run-jcasgen-ctakes-smoking-status) on project ctakes-smoking-status: An >> exception occured while executing the Java class. null: >> InvocationTargetException: An import could not be resolved. No .xml >> file with name "org.apache.ctakes.smokingstatus.types.I2B2TypeSystem" >> was found in the class path or data path. (Descriptor: >> file:/home/dima/workspaces/apache/ctakes/ctakes-smoking-status/target/classes/ >> org/apache/ctakes/smokingstatus/types/TypeSystem.xml) >> -> [Help 1] >> >> >> On 10/10/2012 11:49 AM, Steven Bethard wrote: >>> On Oct 10, 2012, at 9:40 AM, Dmitriy Dligach >>> <[email protected]> wrote: >>>> I am trying to check out cTAKES and build it but I am getting a build >>>> error. Maven stumbles on the smoking-status module. I think the problem >>>> is in TypeSystem.xml file in the smoking-status module. Maven has >>>> problems importing the common type system, i.e.: >>>> >>>> <import name="org.apache.ctakes.typesystem.types.TypeSystem"/> >>> Can you paste the error you're getting? >>> >>> Steve >> >
