I'm having some trouble with this issue on trunk using eclipse. When I
try to run the default pipeline in the cvd it can't find the rxnorm_index:
Caused by: java.io.FileNotFoundException:
org/apache/ctakes/dictionary/lookup/rxnorm_index
at
org.apache.ctakes.core.resource.FileLocator.locateExplicitly(FileLocator.java:69)
at
org.apache.ctakes.core.resource.FileLocator.locateFile(FileLocator.java:44)
at
org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:58)
... 59 more
When I try to compile from the command line it says:
[INFO]
------------------------------------------------------------------------
[INFO] Building Apache cTAKES dictionary lookup
3.1.0-incubating-SNAPSHOT
[INFO]
------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @
ctakes-dictionary-lookup ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources)
@ ctakes-dictionary-lookup ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 54 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-dependency-plugin:2.6:unpack-dependencies
(unpack-dependencies) @ ctakes-dictionary-lookup ---
[INFO] ctakes-resources-umls2011ab-3.1.0.jar already exists in
destination.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @
ctakes-dictionary-lookup ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
-- so it says the resources are there, and I can see the downloaded jar
in my .m2 directory, but they're not being unpacked for some reason
(they are not in target/classes/.../ of dictionary-lookup as I think
they are supposed to be). Anyone else with this problem? Any idea
what's going on?
Tim
On 01/09/2013 05:20 PM, Karthik Sarma wrote:
I was able to check out the 3.0.0 branch and build + run it without
trouble. Will give the trunk another try
--
Karthik Sarma
UCLA Medical Scientist Training Program Class of 20??
Member, UCLA Medical Imaging & Informatics Lab
Member, CA Delegation to the House of Delegates of the American Medical
Association
[email protected]
gchat: [email protected]
linkedin: www.linkedin.com/in/ksarma
On Wed, Jan 9, 2013 at 1:46 PM, Masanz, James J. <[email protected]>wrote:
I did not get this error when I used eclipse's miport feature with maven
from SCM.
Everything built fine (The second time I tried a build)
Note, I did a Maven->Update project... from within eclipse between the two
builds.
-- James
-----Original Message-----
From: [email protected] [mailto:[email protected]] On Behalf Of Karthik
Sarma
Sent: Tuesday, January 08, 2013 6:30 PM
To: cTAKES Developer List
Subject: Failure on unpack-dependencies?
Hi folks,
I was trying to get the trunk up and running on a new windows 8 machine
(completely clean). Installed jdk, eclipse (classic/juno), m2e, and
subversive. I used eclipse's import feature with maven from SCM. Checkout
was fine, but ctakes-dictionary-lookup was not able to build (as far as I
could tell, everything else built just fine. Here is the error:
Execution unpack-dependencies of goal
org.apache.maven.plugins:maven-dependency-plugin:2.6:unpack-dependencies
failed: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.6 or
one
of its dependencies could not be resolved: Failed to collect dependencies
for org.apache.maven.plugins:maven-dependency-plugin:jar:2.6 ()
(org.apache.maven.plugins:maven-dependency-plugin:2.6:unpack-
dependencies:unpack-dependencies:process-resources)
pom.xml /ctakes-dictionary-lookup line 82
I did a few checks to try to diagnose the issue -- the pom seems to be
correct, and the m2e fix for unpack also seems to be correct. The plugin
itself (for umls) exists in my local repository, as does
maven-dependency-
plugin 2.6. There aren't any spaces or other oddities in any of the
paths.
I tried cleaning, re-acquiring the source, and even deleting eclipse and
starting from scratch, but alas, no dice.
Is anyone else having a similar issue? Jenkins says everything should be
working fine. I should probably just try building without involving
eclipse at all, which I will do next.
Karthik
--
Karthik Sarma
UCLA Medical Scientist Training Program Class of 20??
Member, UCLA Medical Imaging & Informatics Lab Member, CA Delegation to
the House of Delegates of the American Medical Association
[email protected]
gchat: [email protected]
linkedin: www.linkedin.com/in/ksarma
