Author: mes
Date: 2009-12-15 17:01:38 -0800 (Tue, 15 Dec 2009)
New Revision: 18777
Added:
cytoscape/trunk/tests/cytoscape/visual/TestEdgeView.java
cytoscape/trunk/tests/cytoscape/visual/TestNetworkView.java
Modified:
cytoscape/trunk/tests/cytoscape/visual/TestNodeView.java
Log:
added some dummy implementations of common interfaces for unit testing
Added: cytoscape/trunk/tests/cytoscape/visual/TestEdgeView.java
===================================================================
--- cytoscape/trunk/tests/cytoscape/visual/TestEdgeView.java
(rev 0)
+++ cytoscape/trunk/tests/cytoscape/visual/TestEdgeView.java 2009-12-16
01:01:38 UTC (rev 18777)
@@ -0,0 +1,242 @@
+/*
+ Copyright (c) 2006, 2007, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+package cytoscape.visual;
+
+import giny.model.Edge;
+
+import giny.view.*;
+
+import java.awt.BasicStroke;
+import java.awt.Color;
+import java.awt.Paint;
+import java.awt.Stroke;
+import java.awt.geom.Point2D;
+import java.util.*;
+
+
+/**
+ * This is a dummy implementation of EdgeView that
+ * can be used for unit testing.
+ */
+public class TestEdgeView implements EdgeView {
+
+ int rootGraphIndex;
+
+ public TestEdgeView() {
+ this(1);
+ }
+
+ public TestEdgeView(int index) {
+ rootGraphIndex = 1;
+ }
+
+ public GraphView getGraphView() {
+ return null;
+ }
+
+ public Edge getEdge() {
+ return null;
+ }
+
+ public int getGraphPerspectiveIndex() {
+ return rootGraphIndex;
+ }
+
+ public int getRootGraphIndex() {
+ return rootGraphIndex;
+ }
+
+ boolean selected;
+ public void select() {
+ selected = true;
+ }
+
+ public void unselect() {
+ selected = false;
+ }
+
+ public boolean isSelected() {
+ return selected;
+ }
+
+ public boolean getSelected() {
+ return selected;
+ }
+
+ public boolean setSelected(boolean s) {
+ selected = s;
+
+ return selected;
+ }
+
+ String toolTip;
+ public void setToolTip(String tip) {
+ toolTip = tip;
+ }
+
+ public String getToolTip() {
+ return toolTip;
+ }
+
+ double label_offset_x;
+ double label_offset_y;
+ int edge_label_anchor;
+ public void setLabelOffsetX(double x) {
+ label_offset_x = x;
+ }
+
+ public double getLabelOffsetX() {
+ return label_offset_x;
+ }
+
+ public void setLabelOffsetY(double y) {
+ label_offset_y = y;
+ }
+
+ public double getLabelOffsetY() {
+ return label_offset_y;
+ }
+
+ public void setEdgeLabelAnchor(int position) {
+ edge_label_anchor = position;
+ }
+
+ public int getEdgeLabelAnchor() {
+ return edge_label_anchor;
+ }
+
+ double label_width;
+ public double getLabelWidth() {
+ return label_width;
+ }
+
+ public void setLabelWidth(double w) {
+ label_width = w;
+ }
+
+ float strokeWidth;
+ public void setStrokeWidth ( float width ) {
+ strokeWidth = width;
+ }
+ public float getStrokeWidth () {
+ return strokeWidth;
+ }
+ Stroke stroke;
+ public void setStroke ( Stroke stroke ) {
+ this.stroke = stroke;
+ }
+ public Stroke getStroke () {
+ return stroke;
+ }
+ int line_type;
+ public void setLineType ( int line_type ) {
+ this.line_type = line_type;
+ }
+ public int getLineType () {
+ return line_type;
+ }
+ Paint unselectedPaint;
+ public Paint getUnselectedPaint () {
+ return unselectedPaint;
+ }
+ Paint selectedPaint;
+ public Paint getSelectedPaint () {
+ return selectedPaint;
+ }
+ Paint srcEdgeEndPaint;
+ public Paint getSourceEdgeEndPaint () {
+ return srcEdgeEndPaint;
+ }
+ Paint srcEdgeEndSelectedPaint;
+ public Paint getSourceEdgeEndSelectedPaint () {
+ return srcEdgeEndSelectedPaint;
+ }
+ Paint trgEdgeEndPaint;
+ public Paint getTargetEdgeEndPaint () {
+ return trgEdgeEndPaint;
+ }
+ Paint trgEdgeEndSelectedPaint;
+ public Paint getTargetEdgeEndSelectedPaint () {
+ return trgEdgeEndSelectedPaint;
+ }
+ public void setSelectedPaint ( Paint paint ) {
+ selectedPaint = paint;
+ }
+ public void setUnselectedPaint ( Paint paint ) {
+ unselectedPaint = paint;
+ }
+ public void setSourceEdgeEndSelectedPaint ( Paint paint ) {
+ srcEdgeEndSelectedPaint = paint;
+ }
+ public void setTargetEdgeEndSelectedPaint ( Paint paint ) {
+ trgEdgeEndSelectedPaint = paint;
+ }
+ public void setSourceEdgeEndStrokePaint ( Paint paint ) {
+ srcEdgeEndPaint = paint;
+ }
+ public void setTargetEdgeEndStrokePaint ( Paint paint ) {
+ trgEdgeEndPaint = paint;
+ }
+ public void setSourceEdgeEndPaint ( Paint paint ) {
+ srcEdgeEndPaint= paint;
+ }
+ public void setTargetEdgeEndPaint ( Paint paint ) {
+ trgEdgeEndPaint = paint;
+ }
+
+ public void updateEdgeView () {}
+ public void updateTargetArrow () {}
+ public void updateSourceArrow () {}
+ int srcEdgeEnd;
+ public void setSourceEdgeEnd(int type) {
+ srcEdgeEnd = type;
+ }
+ int trgEdgeEnd;
+ public void setTargetEdgeEnd(int type) {
+ trgEdgeEnd = type;
+ }
+ public int getSourceEdgeEnd() {
+ return srcEdgeEnd;
+ }
+ public int getTargetEdgeEnd() {
+ return trgEdgeEnd;
+ }
+ public void updateLine() {}
+ public void drawSelected() {}
+ public void drawUnselected() {}
+ public Bend getBend () { return null; }
+ public void clearBends () {}
+ public Label getLabel() { return null; }
+}
Added: cytoscape/trunk/tests/cytoscape/visual/TestNetworkView.java
===================================================================
--- cytoscape/trunk/tests/cytoscape/visual/TestNetworkView.java
(rev 0)
+++ cytoscape/trunk/tests/cytoscape/visual/TestNetworkView.java 2009-12-16
01:01:38 UTC (rev 18777)
@@ -0,0 +1,255 @@
+
+/*
+ Copyright (c) 2006, 2007, The Cytoscape Consortium (www.cytoscape.org)
+
+ The Cytoscape Consortium is:
+ - Institute for Systems Biology
+ - University of California San Diego
+ - Memorial Sloan-Kettering Cancer Center
+ - Institut Pasteur
+ - Agilent Technologies
+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published
+ by the Free Software Foundation; either version 2.1 of the License, or
+ any later version.
+
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF
+ MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. The software and
+ documentation provided hereunder is on an "as is" basis, and the
+ Institute for Systems Biology and the Whitehead Institute
+ have no obligations to provide maintenance, support,
+ updates, enhancements or modifications. In no event shall the
+ Institute for Systems Biology and the Whitehead Institute
+ be liable to any party for direct, indirect, special,
+ incidental or consequential damages, including lost profits, arising
+ out of the use of this software and its documentation, even if the
+ Institute for Systems Biology and the Whitehead Institute
+ have been advised of the possibility of such damage. See
+ the GNU Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public License
+ along with this library; if not, write to the Free Software Foundation,
+ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+*/
+package cytoscape.visual;
+
+import cytoscape.view.CyNetworkView;
+import cytoscape.Cytoscape;
+import cytoscape.CyNode;
+import cytoscape.CyEdge;
+import cytoscape.CyNetwork;
+import cytoscape.layout.CyLayoutAlgorithm;
+import cytoscape.view.CyEdgeView;
+import cytoscape.view.CyNodeView;
+
+import java.awt.Color;
+import java.awt.Font;
+import java.awt.Paint;
+
+import java.awt.Component;
+import java.util.*;
+import javax.swing.JPanel;
+
+import giny.model.*;
+import giny.view.*;
+import ding.view.*;
+
+
+
+/**
+ * A dummy TestNetworkView that can be used to unit test things.
+ */
+public class TestNetworkView implements CyNetworkView {
+ CyNetwork net;
+ public TestNetworkView(CyNetwork net) {
+ this.net = net;
+ }
+ public CyNetwork getNetwork() {
+ return net;
+ }
+ String title;
+ public void setTitle(String title) {
+ this.title = title;
+ }
+ public String getTitle() {
+ return title;
+ }
+ public void redrawGraph(boolean layout, boolean vizmap) {}
+ public CyNetworkView getView() { return this; }
+ public VisualMappingManager getVizMapManager() {
+ return Cytoscape.getVisualMappingManager();
+ }
+ boolean vizmapEnabled = false;
+ public void toggleVisualMapperEnabled() {
+ vizmapEnabled = (vizmapEnabled ? false : true);
+ }
+ public void setVisualMapperEnabled(boolean state) {
+ vizmapEnabled = state;
+ }
+ public boolean getVisualMapperEnabled() {
+ return vizmapEnabled;
+ }
+ public void putClientData(String data_name, Object data) {}
+ public Collection getClientDataNames() { return null; }
+ public Object getClientData(String data_name) { return null; }
+ CyNode[] selectedNodes;
+ public boolean setSelected(CyNode[] nodes) {
+ selectedNodes = nodes;
+ return true;
+ }
+ NodeView[] selectedNodeViews;
+ public boolean setSelected(NodeView[] node_views) {
+ selectedNodeViews = node_views;
+ return true;
+ }
+ public boolean applyVizMap(CyEdge edge) {return true;}
+ public boolean applyVizMap(EdgeView edge_view) {return true;}
+ public boolean applyVizMap(CyNode node) {return true;}
+ public boolean applyVizMap(NodeView node_view) {return true;}
+ public boolean applyVizMap(CyEdge edge, VisualStyle style) {return
true;}
+ public boolean applyVizMap(EdgeView edge_view, VisualStyle style)
{return true;}
+ public boolean applyVizMap(CyNode node, VisualStyle style) {return
true;}
+ public boolean applyVizMap(NodeView node_view, VisualStyle style)
{return true;}
+ CyEdge[] selectedEdges;
+ public boolean setSelected(CyEdge[] edges) {
+ selectedEdges = edges;
+ return true;
+ }
+ EdgeView[] selectedEdgeViews;
+ public boolean setSelected(EdgeView[] edge_views) {
+ selectedEdgeViews = edge_views;
+ return true;
+ }
+ public void applyVizmapper(VisualStyle style) {}
+ public void applyLayout(CyLayoutAlgorithm layout) {}
+ public void applyLockedLayout(CyLayoutAlgorithm layout, CyNode[] nodes,
CyEdge[] edges) {}
+ public void applyLayout(CyLayoutAlgorithm layout, CyNode[] nodes,
CyEdge[] edges) {}
+ public void applyLockedLayout(CyLayoutAlgorithm layout, CyNodeView[]
nodes, CyEdgeView[] edges) {}
+ public void applyLayout(CyLayoutAlgorithm layout, CyNodeView[] nodes,
CyEdgeView[] edges) {}
+ public void applyLockedLayout(CyLayoutAlgorithm layout, int[] nodes,
int[] edges) {}
+ public void applyLayout(CyLayoutAlgorithm layout, int[] nodes, int[]
edges) {}
+ String style;
+ public void setVisualStyle(String VSName) {
+ style = VSName;
+ }
+ public VisualStyle getVisualStyle() { return null; }
+ public void addNodeContextMenuListener(NodeContextMenuListener l) {}
+ public void removeNodeContextMenuListener(NodeContextMenuListener l) {}
+ public void addEdgeContextMenuListener(EdgeContextMenuListener l) {}
+ public void removeEdgeContextMenuListener(EdgeContextMenuListener l) {}
+ public GraphPerspective getGraphPerspective() {
+ return net;
+ }
+ public boolean nodeSelectionEnabled() { return true; }
+ public boolean edgeSelectionEnabled() { return true; }
+ public void enableNodeSelection () {}
+ public void disableNodeSelection () {}
+ public void enableEdgeSelection () {}
+ public void disableEdgeSelection () {}
+ public int[] getSelectedNodeIndices() { return null; }
+ public List getSelectedNodes() { return null; }
+ public int[] getSelectedEdgeIndices() { return null; }
+ public List getSelectedEdges() { return null; }
+ public void addGraphViewChangeListener(GraphViewChangeListener
listener) {}
+ public void removeGraphViewChangeListener(GraphViewChangeListener
listener) {}
+ Paint bgp;
+ public void setBackgroundPaint(Paint paint) {
+ bgp = paint;
+ }
+ public Paint getBackgroundPaint() {
+ return bgp;
+ }
+ public Component getComponent() {
+ return new JPanel();
+ }
+ List<NodeView> nodeViews = new ArrayList<NodeView>();
+ public NodeView addNodeView(int node_index) {
+ NodeView nv = new TestNodeView(node_index);
+ nodeViews.add(nv);
+ return nv;
+ }
+ List<EdgeView> edgeViews = new ArrayList<EdgeView>();
+ public EdgeView addEdgeView(int edge_index) {
+ EdgeView ev = new TestEdgeView(edge_index);
+ edgeViews.add(ev);
+ return ev;
+ }
+ public EdgeView addEdgeView(String class_name, int edge_index) { return
null; }
+ public NodeView addNodeView(String class_name, int node_index) { return
null; }
+ public NodeView addNodeView( int node_index, NodeView
node_view_replacement) {return null;}
+ public NodeView removeNodeView ( NodeView node_view ) {
+ nodeViews.remove(node_view);
+ return node_view;
+ }
+ public NodeView removeNodeView ( Node node ) {return null;}
+ public NodeView removeNodeView ( int node ) {return null;}
+ public EdgeView removeEdgeView ( EdgeView edge_view ) {
+ edgeViews.remove(edge_view);
+ return edge_view;
+ }
+ public EdgeView removeEdgeView ( Edge edge ) {return null;}
+ public EdgeView removeEdgeView ( int edge ) {return null;}
+ String identifier = "";
+ public String getIdentifier() {
+ return identifier;
+ }
+ public void setIdentifier(String new_identifier) {
+ identifier = new_identifier;
+ }
+ double zoom = 1.0;
+ public double getZoom() {
+ return zoom;
+ }
+ public void setZoom(double zoom) {
+ this.zoom = zoom;
+ }
+ public void fitContent() {}
+ public void updateView() {}
+ public RootGraph getRootGraph() { return net.getRootGraph(); }
+ public Iterator getNodeViewsIterator() { return nodeViews.iterator(); }
+ public int getNodeViewCount() { return nodeViews.size(); }
+ public int getEdgeViewCount() { return edgeViews.size(); }
+ public NodeView getNodeView(Node node) { return null; }
+ public NodeView getNodeView(int index) { return null; }
+ public java.util.List getEdgeViewsList() { return edgeViews; }
+ public java.util.List getEdgeViewsList( Node oneNode, Node otherNode)
{ return null; }
+ public java.util.List getEdgeViewsList( int from_node_index, int
to_node_index, boolean include_undirected_edges) { return null; }
+ public EdgeView getEdgeView(int edge_index) { return null; }
+ public Iterator getEdgeViewsIterator() { return edgeViews.iterator(); }
+ public EdgeView getEdgeView(Edge edge) { return null; }
+ public int edgeCount() { return edgeViews.size(); }
+ public int nodeCount() { return nodeViews.size(); }
+ public boolean hideGraphObject(Object object) { return true;}
+ public boolean showGraphObject(Object object) { return true; }
+ public boolean hideGraphObjects(List objects) { return true;}
+ public boolean showGraphObjects(List objects) { return true; }
+ public Object[] getContextMethods( String class_name, boolean
plus_superclass) { return null; }
+ public Object[] getContextMethods( String class_name, Object[] methods)
{ return null; }
+ public boolean addContextMethod( String class_name, String
method_class_name, String method_name, Object[] args, ClassLoader loader ) {
return true; }
+ public void setAllNodePropertyData(int node_index, Object[] data) {}
+ public Object[] getAllNodePropertyData(int node_index) { return null; }
+ public void setAllEdgePropertyData(int edge_index, Object[] data) {}
+ public Object[] getAllEdgePropertyData(int edge_index) { return null; }
+ public Object getNodeObjectProperty(int node_index, int property) {
return null; }
+ public boolean setNodeObjectProperty( int node_index, int property,
Object value) {return true;}
+ public Object getEdgeObjectProperty(int edge_index, int property) {
return null; }
+ public boolean setEdgeObjectProperty( int edge_index, int property,
Object value) {return true;}
+ public double getNodeDoubleProperty(int node_index, int property) {
return 0d; }
+ public boolean setNodeDoubleProperty( int node_index, int property,
double value) {return true;}
+ public double getEdgeDoubleProperty(int edge_index, int property) {
return 0d; }
+ public boolean setEdgeDoubleProperty( int edge_index, int property,
double value) {return true;}
+ public float getNodeFloatProperty(int node_index, int property) {
return 0f; }
+ public boolean setNodeFloatProperty( int node_index, int property,
float value) {return true;}
+ public float getEdgeFloatProperty(int edge_index, int property) {
return 0f; }
+ public boolean setEdgeFloatProperty( int edge_index, int property,
float value) {return true;}
+ public boolean getNodeBooleanProperty(int node_index, int property) {
return true; }
+ public boolean setNodeBooleanProperty( int node_index, int property,
boolean value) {return true;}
+ public boolean getEdgeBooleanProperty(int edge_index, int property) {
return true; }
+ public boolean setEdgeBooleanProperty( int edge_index, int property,
boolean value) {return true;}
+ public int getNodeIntProperty(int node_index, int property) { return
0; }
+ public boolean setNodeIntProperty( int node_index, int property, int
value) {return true;}
+ public int getEdgeIntProperty(int edge_index, int property) { return
0; }
+ public boolean setEdgeIntProperty( int edge_index, int property, int
value) {return true;}
+}
Modified: cytoscape/trunk/tests/cytoscape/visual/TestNodeView.java
===================================================================
--- cytoscape/trunk/tests/cytoscape/visual/TestNodeView.java 2009-12-16
00:38:31 UTC (rev 18776)
+++ cytoscape/trunk/tests/cytoscape/visual/TestNodeView.java 2009-12-16
01:01:38 UTC (rev 18777)
@@ -73,12 +73,19 @@
int node_label_anchor = 0;
double label_width = 100.0;
+ int rootGraphIndex;
+
/**
* Creates a new TestNodeView object.
*/
public TestNodeView() {
+ this(1);
}
+ public TestNodeView(int index) {
+ rootGraphIndex = 1;
+ }
+
/**
* DOCUMENT ME!
*
@@ -103,7 +110,7 @@
* @return DOCUMENT ME!
*/
public int getGraphPerspectiveIndex() {
- return 1;
+ return rootGraphIndex;
}
/**
@@ -112,7 +119,7 @@
* @return DOCUMENT ME!
*/
public int getRootGraphIndex() {
- return 1;
+ return rootGraphIndex;
}
/**
--
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/cytoscape-cvs?hl=en.
