See <http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20application/11/>
------------------------------------------ [...truncated 1562 lines...] testXGMMLWriterRoundTrip2bFullEncodingOff(cytoscape.data.writers.XGMMLWriterTest) testXGMMLWriterRoundTrip2cFullEncodingDefault(cytoscape.data.writers.XGMMLWriterTest) testXGMMLWriterRoundTrip2cFullEncodingOn(cytoscape.data.writers.XGMMLWriterTest) testXGMMLWriterRoundTrip2cFullEncodingOff(cytoscape.data.writers.XGMMLWriterTest) testXGMMLWriterBug0001938(cytoscape.data.writers.XGMMLWriterTest) testWriter(cytoscape.visual.mappings.continuous.TestContinuousMappingWriter) testGetCategory(cytoscape.util.BookmarksUtilTest) testGetDataSourceList(cytoscape.util.BookmarksUtilTest) testCreateNetwork(cytoscape.data.CyNetworkTest) testGetTitle(cytoscape.data.CyNetworkTest) testSetTitle(cytoscape.data.CyNetworkTest) testGetIdentifier(cytoscape.data.CyNetworkTest) testSetIdentifier(cytoscape.data.CyNetworkTest) testAppendNetwork(cytoscape.data.CyNetworkTest) testSelectAllNodes(cytoscape.data.CyNetworkTest) 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testBug(cytoscape.BugGetCyNodeTest) testGetBypass(cytoscape.visual.BypassHelperTest) testGetColorBypass(cytoscape.visual.BypassHelperTest) testParseColorText(cytoscape.util.ColorUtilTest) testGetColorAsText(cytoscape.util.ColorUtilTest) testBug925(cytoscape.view.CytoscapeViewTest) testFilterToViewSelect(cytoscape.view.CytoscapeViewTest) testViewToFilterSelect(cytoscape.view.CytoscapeViewTest) testGetReader(cytoscape.util.GMLFileFilterTest) testWriter(cytoscape.visual.mappings.discrete.DiscreteMappingWriterTest) testControllerTypeWriting(cytoscape.visual.mappings.discrete.DiscreteMappingWriterTest) testControllerTypeWritingWithAttr(cytoscape.visual.mappings.discrete.DiscreteMappingWriterTest) testPassThrough(cytoscape.visual.mappings.PassthroughMappingTest) testNestedNetworkReconstruction1(cytoscape.data.readers.CytoscapeSessionReaderTest) testNestedNetworkReconstruction2(cytoscape.data.readers.CytoscapeSessionReaderTest) testGetImportHandler(cytoscape.CytoscapeTest) testNullNetwork(cytoscape.CytoscapeTest) testCreateNonexistentNetwork(cytoscape.CytoscapeTest) testBug839(cytoscape.CytoscapeTest) testgetCyEdgeWithStrings(cytoscape.CytoscapeTest) testgetCyEdgeWithNodes(cytoscape.CytoscapeTest) testGetCyEdgeWithBadNodeStrings(cytoscape.CytoscapeTest) testSetNestedNetworkAndGetNestedNetwork(cytoscape.CytoscapeTest) testSetNestedNetwork_before(cytoscape.CyNodeTest) testSetNestedNetwork_after(cytoscape.CyNodeTest) testGMLImport(cytoscape.data.readers.FileImporterTest) testXGMMLImport(cytoscape.data.readers.FileImporterTest) testSIFImport(cytoscape.data.readers.FileImporterTest) testReadFromTypicalFile(cytoscape.data.readers.InteractionsReaderTest) testReadFileWithNoInteractions(cytoscape.data.readers.InteractionsReaderTest) testGetGraph(cytoscape.data.readers.InteractionsReaderTest) testGetGraphAndEdgeAttributes(cytoscape.data.readers.InteractionsReaderTest) testReadMultiWordProteinsFile(cytoscape.data.readers.InteractionsReaderTest) testReadMultiWordProteinsFileWithErrantSpaces(cytoscape.data.readers.InteractionsReaderTest) testProperties(cytoscape.visual.VizMapPropertiesTest) testVisualStyle(cytoscape.visual.VizMapPropertiesTest) testDefaultAppearance(cytoscape.visual.NodeAppearanceCalculatorTest) testApplyProperties(cytoscape.visual.NodeAppearanceCalculatorTest) testNodeSizeLock(cytoscape.visual.NodeAppearanceCalculatorTest) testBypass(cytoscape.visual.NodeAppearanceCalculatorTest) testGood1(cytoscape.data.readers.NNFReaderTest) testGood2(cytoscape.data.readers.NNFReaderTest) testGood3(cytoscape.data.readers.NNFReaderTest) testGood4(cytoscape.data.readers.NNFReaderTest) testGood5(cytoscape.data.readers.NNFReaderTest) testGood6(cytoscape.data.readers.NNFReaderTest) testBad1(cytoscape.data.readers.NNFReaderTest) testBad2(cytoscape.data.readers.NNFReaderTest) testMultipleFiles(cytoscape.data.readers.NNFReaderTest) testCtor(cytoscape.data.SelectEventTest) testSmallGraphRead(cytoscape.data.readers.GMLReaderTest) testMediumGraphRead(cytoscape.data.readers.GMLReaderTest) testIllFormattedGML(cytoscape.data.readers.GMLReaderTest) testBug1565(cytoscape.data.readers.GMLReaderTest) testFilterToView(cytoscape.view.FlagAndSelectionHandlerTest) testViewToFilter(cytoscape.view.FlagAndSelectionHandlerTest) testParseRGBTest(cytoscape.util.MiscTest) testGetName(cytoscape.data.ontology.OntologyTest) testGetCurator(cytoscape.data.ontology.OntologyTest) testAdd(cytoscape.data.ontology.OntologyTest) testSize(cytoscape.data.ontology.OntologyTest) testGetTerms(cytoscape.data.ontology.OntologyTest) testContainsTerm(cytoscape.data.ontology.OntologyTest) testGetTerm(cytoscape.data.ontology.OntologyTest) testToString(cytoscape.data.ontology.OntologyTest) testContainsTriple(cytoscape.data.ontology.OntologyTest) testCreateTermStringString(cytoscape.data.ontology.OntologyTest) testCreateTermStringStringObjectArray(cytoscape.data.ontology.OntologyTest) testCreateTriple(cytoscape.data.ontology.OntologyTest) testDeleteTerm(cytoscape.data.ontology.OntologyTest) testGetDescription(cytoscape.data.ontology.OntologyTest) testGetTriples(cytoscape.data.ontology.OntologyTest) testGetXrefMap(cytoscape.data.ontology.readers.DBCrossReferenceReaderTest) testBug(cytoscape.BugHideNodeEventFiringTest) testBasic(cytoscape.data.CyNetworkEventTest) testSetNodeAttributeValue(cytoscape.data.NetworkDataTest) testSingleFlags(cytoscape.data.SelectFilterTest) testGroupFlags(cytoscape.data.SelectFilterTest) testFlagAll(cytoscape.data.SelectFilterTest) testListeners(cytoscape.data.SelectFilterTest) testMakeNewMetadataMap(cytoscape.data.readers.MetadataParserTest) testSetMetadata(cytoscape.data.readers.MetadataParserTest) testToString(cytoscape.data.CyAttributesUtilsTest) testTraverseAttributeValues(cytoscape.data.CyAttributesUtilsTest) testCopyAttributes(cytoscape.data.CyAttributesUtilsTest) testCopyAttribute(cytoscape.data.CyAttributesUtilsTest) testCopyAttribute2(cytoscape.data.CyAttributesUtilsTest) testNetwork(cytoscape.util.GraphSetUtilsTest) testIntersection(cytoscape.util.GraphSetUtilsTest) testDifference(cytoscape.util.GraphSetUtilsTest) testDifference2(cytoscape.util.GraphSetUtilsTest) testDifference_2(cytoscape.util.GraphSetUtilsTest) testDifference2_2(cytoscape.util.GraphSetUtilsTest) testUnion(cytoscape.util.GraphSetUtilsTest) testReader(cytoscape.visual.mappings.continuous.TestContinuousMappingReader) testPluginFileReader(cytoscape.plugin.PluginFileReaderTest) testGetProjectName(cytoscape.plugin.PluginFileReaderTest) testGetProjectDescription(cytoscape.plugin.PluginFileReaderTest) testGetProjectUrl(cytoscape.plugin.PluginFileReaderTest) testGetPlugins(cytoscape.plugin.PluginFileReaderTest) testGetPluginsLicense(cytoscape.plugin.PluginFileReaderTest) testGetThemes(cytoscape.plugin.PluginFileReaderTest) testReadFileMissingThemes(cytoscape.plugin.PluginFileReaderTest) testVersionReads(cytoscape.plugin.PluginFileReaderTest) testThemePlugins(cytoscape.plugin.PluginFileReaderTest) testDownloadPluginWebstart(cytoscape.plugin.PluginManagerTest) testInquireString(cytoscape.plugin.PluginManagerTest) testInquirePartialXML(cytoscape.plugin.PluginManagerTest) testInstallTheme(cytoscape.plugin.PluginManagerTest) testInstallPlugin(cytoscape.plugin.PluginManagerTest) testInstallPluginZip(cytoscape.plugin.PluginManagerTest) testInstallIncorrectFileType(cytoscape.plugin.PluginManagerTest) testDeletePluginInfo(cytoscape.plugin.PluginManagerTest) testDeletePlugin(cytoscape.plugin.PluginManagerTest) testDeleteTheme(cytoscape.plugin.PluginManagerTest) testFindThemeUpdates(cytoscape.plugin.PluginManagerTest) testFindPluginUpdates(cytoscape.plugin.PluginManagerTest) testUpdateTheme(cytoscape.plugin.PluginManagerTest) testUpdatePlugin(cytoscape.plugin.PluginManagerTest) testDownloadGoodTheme(cytoscape.plugin.PluginManagerTest) testDownloadGoodPlugin(cytoscape.plugin.PluginManagerTest) testDownloadBadPlugin(cytoscape.plugin.PluginManagerTest) testDuplicates(cytoscape.plugin.PluginManagerTest) Tests run: 344, Failures: 0, Errors: 178, Skipped: 0 [HUDSON] Recording test results [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20application/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape 2.X application/modules/cytoscape$application/builds/2010-08-04_16-02-50/archive/cytoscape/application/2.8.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] There are test failures. Please refer to <http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20application/ws/trunk/target/surefire-reports> for the individual test results. [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 1 minute 17 seconds [INFO] Finished at: Wed Aug 04 16:04:09 EDT 2010 [INFO] Final Memory: 72M/618M [INFO] ------------------------------------------------------------------------ Waiting for Hudson to finish collecting data Maven failed with error. Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Application [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 1.8 [INFO] [sonar-core:internal] [INFO] Sonar JDBC URL: jdbc:mysql://localhost:3306/sonar [INFO] Sonar JDBC login: sonar [INFO] Sonar JDBC driver: com.mysql.jdbc.Driver [INFO] Sonar branch: [INFO] Cytoscape Application Selected quality profile : Cytoscape, language=java [INFO] Cytoscape Application Executing org.codehaus.mojo:findbugs-maven-plugin:[findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Application [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:1.2:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [jaxb2:generate {execution: session}] [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.3:runtime, org.codehaus.plexus:plexus-utils:jar:1.1:runtime, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:runtime, com.sun.xml.bind:jaxb-impl:jar:2.1.12:runtime, javax.xml.bind:jaxb-api:jar:2.1:runtime, javax.xml.stream:stax-api:jar:1.0-2:runtime, javax.activation:activation:jar:1.1:runtime, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.12:runtime, com.sun.codemodel:codemodel:jar:2.2:runtime, com.sun.xml.dtd-parser:dtd-parser:jar:1.0:runtime, com.sun.istack:istack-commons-tools:jar:1.1:runtime, relaxngDatatype:relaxngDatatype:jar:20020414:runtime, com.sun.org.apache.xml.internal:resolver:jar:20050927:runtime, org.kohsuke.rngom:rngom:jar:20061207:runtime, com.sun.xsom:xsom:jar:20081112:runtime] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20application/ws/trunk/src/main/resources/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@6f45959c [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20application/ws/trunk/src/main/resources/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@41616dd6 [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:cytoscape.generated [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20application/ws/trunk/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20application/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20application/ws/trunk/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20application/ws/trunk/src/main/resources/xsd/cysession.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Cannot find CatalogManager.properties Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cytoscape%202.X%20application/ws/trunk/target/generated-sources/xjc].> [INFO] XJC writing: cytoscape/generated/Child.java -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
