See <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/24/>
------------------------------------------ [...truncated 4727 lines...] [INFO] Compiling 32 source files to <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/classes> [INFO] [batik:rasterize {execution: default}] [INFO] Rasterizing 12 images from SVG to image/png Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/util-intr/2.8.0-SNAPSHOT/util-intr-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:util-intr:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/graph-dynamic/2.8.0-SNAPSHOT/graph-dynamic-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:graph-dynamic:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/graph-fixed/2.8.0-SNAPSHOT/graph-fixed-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:graph-fixed:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/geom-rtree/2.8.0-SNAPSHOT/geom-rtree-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:geom-rtree:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/equations/2.8.0-SNAPSHOT/equations-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:equations:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/commons-cli-1-x-cytocape-custom/2.8.0-SNAPSHOT/commons-cli-1-x-cytocape-custom-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:commons-cli-1-x-cytocape-custom:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/util-intr/2.8.0-SNAPSHOT/util-intr-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:util-intr:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/graph-dynamic/2.8.0-SNAPSHOT/graph-dynamic-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:graph-dynamic:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/graph-fixed/2.8.0-SNAPSHOT/graph-fixed-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:graph-fixed:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/geom-rtree/2.8.0-SNAPSHOT/geom-rtree-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:geom-rtree:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/equations/2.8.0-SNAPSHOT/equations-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:equations:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/commons-cli-1-x-cytocape-custom/2.8.0-SNAPSHOT/commons-cli-1-x-cytocape-custom-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:commons-cli-1-x-cytocape-custom:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) [INFO] Setting property: classpath.resource.loader.class => 'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'. [INFO] Setting property: velocimacro.messages.on => 'false'. [INFO] Setting property: resource.loader => 'classpath'. [INFO] Setting property: resource.manager.logwhenfound => 'false'. [INFO] ************************************************************** [INFO] Starting Jakarta Velocity v1.4 [INFO] RuntimeInstance initializing. [INFO] Default Properties File: org/apache/velocity/runtime/defaults/velocity.properties [INFO] Default ResourceManager initializing. (class org.apache.velocity.runtime.resource.ResourceManagerImpl) [INFO] Resource Loader Instantiated: org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader [INFO] ClasspathResourceLoader : initialization starting. [INFO] ClasspathResourceLoader : initialization complete. [INFO] ResourceCache : initialized. (class org.apache.velocity.runtime.resource.ResourceCacheImpl) [INFO] Default ResourceManager initialization complete. [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach [INFO] Created: 20 parsers. [INFO] Velocimacro : initialization starting. [INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm [ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any resource loader. [INFO] Velocimacro : error using VM library template VM_global_library.vm : org.apache.velocity.exception.ResourceNotFoundException: Unable to find resource 'VM_global_library.vm' [INFO] Velocimacro : VM library template macro registration complete. [INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates [INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT replace previous VM definitions [INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be global in scope if allowed. [INFO] Velocimacro : initialization complete. [INFO] Velocity successfully started. [INFO] [findbugs:findbugs] [INFO] Using maximum effort. [INFO] Using low threshold. [INFO] Using FindBugs Version: 1.3.2 [INFO] Using low threshold. [INFO] Using low threshold. [INFO] Using the xdoc format [INFO] Using maximum effort. [INFO] Using low threshold. [INFO] Using low threshold. [INFO] Debugging is Off [INFO] Using bug include filter <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/target/sonar/findbugs-include.xml> [INFO] No bug exclude filter. [INFO] Printing Errors [INFO] Printing Missing classes [INFO] Printing Source Roots [INFO] Cytoscape Application Executing org.apache.maven.plugins:maven-checkstyle-plugin:[checkstyle] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Application [INFO] task-segment: [org.apache.maven.plugins:maven-checkstyle-plugin:2.2:checkstyle] [INFO] ------------------------------------------------------------------------ Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/util-intr/2.8.0-SNAPSHOT/util-intr-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:util-intr:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/graph-dynamic/2.8.0-SNAPSHOT/graph-dynamic-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:graph-dynamic:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/graph-fixed/2.8.0-SNAPSHOT/graph-fixed-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:graph-fixed:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/geom-rtree/2.8.0-SNAPSHOT/geom-rtree-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:geom-rtree:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/equations/2.8.0-SNAPSHOT/equations-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:equations:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/commons-cli-1-x-cytocape-custom/2.8.0-SNAPSHOT/commons-cli-1-x-cytocape-custom-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:commons-cli-1-x-cytocape-custom:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/util-intr/2.8.0-SNAPSHOT/util-intr-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:util-intr:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/graph-dynamic/2.8.0-SNAPSHOT/graph-dynamic-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:graph-dynamic:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/graph-fixed/2.8.0-SNAPSHOT/graph-fixed-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:graph-fixed:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/geom-rtree/2.8.0-SNAPSHOT/geom-rtree-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:geom-rtree:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/equations/2.8.0-SNAPSHOT/equations-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:equations:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//cytoscape/corelibs/commons-cli-1-x-cytocape-custom/2.8.0-SNAPSHOT/commons-cli-1-x-cytocape-custom-2.8.0-SNAPSHOT.jar [INFO] Unable to find resource 'cytoscape.corelibs:commons-cli-1-x-cytocape-custom:jar:2.8.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) [INFO] Setting property: classpath.resource.loader.class => 'org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader'. [INFO] Setting property: velocimacro.messages.on => 'false'. [INFO] Setting property: resource.loader => 'classpath'. [INFO] Setting property: resource.manager.logwhenfound => 'false'. [INFO] ************************************************************** [INFO] Starting Jakarta Velocity v1.4 [INFO] RuntimeInstance initializing. [INFO] Default Properties File: org/apache/velocity/runtime/defaults/velocity.properties [INFO] Default ResourceManager initializing. (class org.apache.velocity.runtime.resource.ResourceManagerImpl) [INFO] Resource Loader Instantiated: org.codehaus.plexus.velocity.ContextClassLoaderResourceLoader [INFO] ClasspathResourceLoader : initialization starting. [INFO] ClasspathResourceLoader : initialization complete. [INFO] ResourceCache : initialized. (class org.apache.velocity.runtime.resource.ResourceCacheImpl) [INFO] Default ResourceManager initialization complete. [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Literal [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Macro [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Parse [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Include [INFO] Loaded System Directive: org.apache.velocity.runtime.directive.Foreach [INFO] Created: 20 parsers. [INFO] Velocimacro : initialization starting. [INFO] Velocimacro : adding VMs from VM library template : VM_global_library.vm [ERROR] ResourceManager : unable to find resource 'VM_global_library.vm' in any resource loader. [INFO] Velocimacro : error using VM library template VM_global_library.vm : org.apache.velocity.exception.ResourceNotFoundException: Unable to find resource 'VM_global_library.vm' [INFO] Velocimacro : VM library template macro registration complete. [INFO] Velocimacro : allowInline = true : VMs can be defined inline in templates [INFO] Velocimacro : allowInlineToOverride = false : VMs defined inline may NOT replace previous VM definitions [INFO] Velocimacro : allowInlineLocal = false : VMs defined inline will be global in scope if allowed. [INFO] Velocimacro : initialization complete. [INFO] Velocity successfully started. [INFO] [checkstyle:checkstyle] [INFO] There are 1544 checkstyle errors. [INFO] Cytoscape Application Executing org.apache.maven.plugins:maven-pmd-plugin:[pmd] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Application [INFO] task-segment: [org.apache.maven.plugins:maven-pmd-plugin:2.4:pmd] [INFO] ------------------------------------------------------------------------ [INFO] [pmd:pmd] [INFO] Cytoscape Application Executing org.codehaus.mojo:javancss-maven-plugin:[report] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Application [INFO] task-segment: [org.codehaus.mojo:javancss-maven-plugin:2.0-beta-2:report] [INFO] ------------------------------------------------------------------------ [INFO] [javancss:report] ParseException in <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/src/main/java/cytoscape/visual/mappings/ObjectMapping.java> Last useful checkpoint: "cytoscape.visual.mappings.ObjectMapping" Encountered "public static final byte EDGE_MAPPING =" at line 72, column 5. Was expecting one of: "boolean" ... "byte" ... "char" ... "double" ... "float" ... "int" ... "long" ... "short" ... "@" ... "." ... "(" ... "public" "public" ... "public" "static" "public" ... "public" "static" "static" ... "public" "static" "protected" ... "public" "static" "private" ... "public" "static" "final" "public" ... "public" "static" "final" "static" ... "public" "static" "final" "protected" ... "public" "static" "final" "private" ... "public" "static" "final" "final" ... "public" "static" "final" "abstract" ... "public" "static" "final" "synchronized" ... "public" "static" "final" "native" ... "public" "static" "final" "transient" ... "public" "static" "final" "volatile" ... "public" "static" "final" "strictfp" ... "public" "static" "final" "@" ... "public" "static" "final" "enum" ... "public" "protected" ... "public" "private" ... "public" "static" "abstract" ... "public" "static" "final" "<" ... "public" "static" "final" "void" ... "public" "static" "final" "boolean" ... "public" "static" "final" "char" ... "public" "static" "final" "byte" "[" ... "public" "static" "final" <IDENTIFIER> ... "public" "static" "final" "byte" <IDENTIFIER> "(" ... <IDENTIFIER> ... [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute mojo Encountered "public static final byte EDGE_MAPPING =" at line 72, column 5. Was expecting one of: "boolean" ... "byte" ... "char" ... "double" ... "float" ... "int" ... "long" ... "short" ... "@" ... "." ... "(" ... "public" "public" ... "public" "static" "public" ... "public" "static" "static" ... "public" "static" "protected" ... "public" "static" "private" ... "public" "static" "final" "public" ... "public" "static" "final" "static" ... "public" "static" "final" "protected" ... "public" "static" "final" "private" ... "public" "static" "final" "final" ... "public" "static" "final" "abstract" ... "public" "static" "final" "synchronized" ... "public" "static" "final" "native" ... "public" "static" "final" "transient" ... "public" "static" "final" "volatile" ... "public" "static" "final" "strictfp" ... "public" "static" "final" "@" ... "public" "static" "final" "enum" ... "public" "protected" ... "public" "private" ... "public" "static" "abstract" ... "public" "static" "final" "<" ... "public" "static" "final" "void" ... "public" "static" "final" "boolean" ... "public" "static" "final" "char" ... "public" "static" "final" "byte" "[" ... "public" "static" "final" <IDENTIFIER> ... "public" "static" "final" "byte" <IDENTIFIER> "(" ... <IDENTIFIER> ... [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 2 minutes 22 seconds [INFO] Finished at: Sat Aug 14 21:03:16 EDT 2010 [INFO] Final Memory: 111M/1156M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
