See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/1658/changes>
Changes: [pwang] Due to class rename [pwang] Class rename ------------------------------------------ [...truncated 90 lines...] A src/main/java/org/cytoscape/io/internal/read/cysession/CysessionReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/gml AU src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkViewReaderFactory.java AU src/main/java/org/cytoscape/io/internal/read/gml/GMLFileFilter.java A src/main/java/org/cytoscape/io/internal/read/gml/KeyValue.java A src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java A src/main/java/org/cytoscape/io/internal/read/datatable A src/main/java/org/cytoscape/io/internal/read/datatable/CyAttributesReader.java.asdf A src/main/java/org/cytoscape/io/internal/read/datatable/TextDataTableReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/datatable/TextDataTableReader.java A src/main/java/org/cytoscape/io/internal/read/sif A src/main/java/org/cytoscape/io/internal/read/sif/Interaction.java A src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/session A src/main/java/org/cytoscape/io/internal/read/session/SessionReaderFactoryImpl.java A src/main/java/org/cytoscape/io/internal/read/session/SessionReaderImpl.java A src/main/java/org/cytoscape/io/internal/read/xgmml A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLParser.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/xgmml/HandlerFactory.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ObjectTypeMap.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ObjectType.java A src/main/java/org/cytoscape/io/internal/read/xgmml/MetadataEntries.java A src/main/java/org/cytoscape/io/internal/read/xgmml/RDFTags.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLFileFilter.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ParseState.java A src/main/java/org/cytoscape/io/internal/read/xgmml/SAXState.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/xgmml/Handler.java A src/main/java/org/cytoscape/io/internal/read/xgmml/MetadataParser.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleListAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraph.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleListAttributeDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraphics.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttributeDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraphDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFType.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFTitle.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/ReadDataManager.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFFormat.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AbstractHandler.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeGraphics.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNode.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFSource.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroup.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttributeDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroupDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroupNode.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdge.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDate.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDF.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleList.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNetworkAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFIdentifier.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDescription.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandle.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AttributeValueUtil.java A src/main/java/org/cytoscape/io/internal/read/CopyInputStream.java A src/main/java/org/cytoscape/io/internal/read/bookmarks A src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkReader.java A src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkFileFilter.java A src/main/java/org/cytoscape/io/internal/read/properties A src/main/java/org/cytoscape/io/internal/read/properties/PropertiesReader.java A src/main/java/org/cytoscape/io/internal/read/properties/PropertiesFileFilter.java A src/main/java/org/cytoscape/io/internal/read/properties/PropertiesReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/CySessionReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/expression A src/main/java/org/cytoscape/io/internal/read/expression/mRNAMeasurement.java A src/main/java/org/cytoscape/io/internal/read/expression/ExpressionData.java A src/main/java/org/cytoscape/io/internal/read/CyPropertyReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/CyNetworkViewReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/CyTableReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/AbstractPropertyReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/AbstractNetworkViewReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/AbstractTableReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java A src/main/java/org/cytoscape/io/internal/read/VisualStyleBuilder.java A src/main/java/org/cytoscape/io/internal/read/AbstractPropertyReader.java A src/main/java/org/cytoscape/io/internal/read/AbstractNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/MarkSupportedInputStream.java A src/main/java/org/cytoscape/io/internal/read/AbstractTableReader.java A src/main/java/org/cytoscape/io/internal/util A src/main/java/org/cytoscape/io/internal/util/StreamUtilImpl.java A src/main/java/org/cytoscape/io/internal/util/ReadUtils.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml U . At revision 22404 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 57027 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 0 resource Downloading: http://maven.springframework.org/osgi/org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:service-util:pom:1.0-SNAPSHOT' in repository spring-osgified-artifacts (http://maven.springframework.org/osgi) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:service-util:pom:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:service-util:pom:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) [INFO] [pax:compile] [INFO] Compiling 111 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 IO impl/modules/org.cytoscape$io-impl/builds/2010-10-25_19-01-23/archive/org.cytoscape/io-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/write/graphics/BitmapWriterFactory.java>:[4,29] cannot find symbol symbol : class PresentationWriterFactory location: package org.cytoscape.io.write <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/write/graphics/BitmapWriterFactory.java>:[16,44] cannot find symbol symbol: class PresentationWriterFactory public class BitmapWriterFactory implements PresentationWriterFactory { <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/write/PresentationWriterManagerImpl.java>:[4,29] cannot find symbol symbol : class PresentationWriterManager location: package org.cytoscape.io.write <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/write/PresentationWriterManagerImpl.java>:[5,29] cannot find symbol symbol : class PresentationWriterFactory location: package org.cytoscape.io.write <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/write/PresentationWriterManagerImpl.java>:[17,73] cannot find symbol symbol: class PresentationWriterFactory public class PresentationWriterManagerImpl extends AbstractWriterManager<PresentationWriterFactory> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/write/PresentationWriterManagerImpl.java>:[18,12] cannot find symbol symbol: class PresentationWriterManager implements PresentationWriterManager { <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/write/PresentationWriterManagerImpl.java>:[29,2] cannot find symbol symbol : class PresentationWriterFactory location: class org.cytoscape.io.internal.write.PresentationWriterManagerImpl [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 23 seconds [INFO] Finished at: Mon Oct 25 19:01:48 EDT 2010 [INFO] Final Memory: 54M/492M [INFO] ------------------------------------------------------------------------ Waiting for Hudson to finish collecting data Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 Downloading: http://maven.springframework.org/osgi/org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:service-util:pom:1.0-SNAPSHOT' in repository spring-osgified-artifacts (http://maven.springframework.org/osgi) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:service-util:pom:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:service-util:pom:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://maven.springframework.org/osgi/org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository spring-osgified-artifacts (http://maven.springframework.org/osgi) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) Downloading: http://maven.springframework.org/osgi/org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository spring-osgified-artifacts (http://maven.springframework.org/osgi) Downloading: http://repository.ops4j.org/maven2//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository ops4j.releases (http://repository.ops4j.org/maven2/) Downloading: http://www.l2fprod.com/maven2//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository l2fprod-maven-repo (http://www.l2fprod.com/maven2/) [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.io-impl [org.cytoscape.io] [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 948 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 53 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 1218 ms [INFO] Squid extraction... [INFO] Squid extraction done: 1397 ms [INFO] Sensor SquidSensor done: 2702 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 24 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 4 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 37 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 847 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 111 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 32 seconds [INFO] Finished at: Mon Oct 25 19:02:33 EDT 2010 [INFO] Final Memory: 75M/721M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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