See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/1659/changes>
Changes: [pwang] Due to method rename and signature change [mes] changed createColumn syntax for CyTable ------------------------------------------ [...truncated 288 lines...] [INFO] Java AST scan... [INFO] Java AST scan done: 1025 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/bookmarks/BookmarksWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractTableReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleListAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleListAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/expression/mRNAMeasurement' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyTableReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/HandlerFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractCyNetworkViewWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/CyFileFilterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/session/SessionWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraphics' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroup' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFTitle' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDF' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleList' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/GenericReaderManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/MarkSupportedInputStream' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/expression/ExpressionData' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CopyInputStream' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/sif/SifWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdge' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFSource' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGraphDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/BitmapWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNodeAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyNetworkViewReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroupDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFIdentifier' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractPropertyWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/CyTableWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/BitmapWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/PropertyWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/SIFNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/XGMMLNetworkViewWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/PDFExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/SAXState' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/datatable/TextDataTableReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/cysession/CysessionWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/Exporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/Interaction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/session/SessionReaderImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/RDFTags' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/KeyValue' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/CyNetworkViewWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/properties/PropertiesWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/PresentationWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFFormat' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/sif/SifNetworkWriterFactory' is not accessible through the ClassLoader. [WARN] Class '[Lorg/cytoscape/io/internal/read/xgmml/ParseState;' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/bookmarks/BookmarksWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/session/SessionReaderFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyPropertyReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class '[Lorg/cytoscape/io/internal/read/xgmml/ObjectType;' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/session/SessionWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDescription' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/ObjectType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNetworkAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLParser$FilterNewlineReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/properties/PropertiesWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/GraphicsType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/SVGExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDate' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/XGMMLWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandle' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/util/StreamUtilImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroupNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/cysession/CysessionWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractTableReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/VisualStyleBuilder' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/datatable/TextDataTableReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeGraphics' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/PSExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CySessionReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/SessionWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractWriterManager' is not accessible through the ClassLoader. [WARN] Class '[Lorg/cytoscape/io/internal/read/xgmml/MetadataEntries;' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/bookmarks/BookmarksWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractTableReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleListAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleListAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/expression/mRNAMeasurement' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyTableReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/HandlerFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractCyNetworkViewWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/CyFileFilterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/session/SessionWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraphics' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroup' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFTitle' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDF' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleList' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/GenericReaderManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/MarkSupportedInputStream' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/expression/ExpressionData' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CopyInputStream' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/sif/SifWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdge' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFSource' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGraphDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/BitmapWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNodeAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyNetworkViewReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroupDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFIdentifier' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractPropertyWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/CyTableWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/BitmapWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/PropertyWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/SIFNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/XGMMLNetworkViewWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/PDFExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/SAXState' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/datatable/TextDataTableReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/cysession/CysessionWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/Exporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/Interaction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/session/SessionReaderImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/RDFTags' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/KeyValue' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/CyNetworkViewWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/properties/PropertiesWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/PresentationWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFFormat' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/sif/SifNetworkWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/bookmarks/BookmarksWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/session/SessionReaderFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyPropertyReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/session/SessionWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDescription' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/ObjectType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNetworkAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLParser$FilterNewlineReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/properties/PropertiesWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/GraphicsType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/SVGExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDate' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/XGMMLWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandle' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/util/StreamUtilImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroupNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/cysession/CysessionWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractTableReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/VisualStyleBuilder' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/datatable/TextDataTableReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeGraphics' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/PSExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CySessionReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/SessionWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractWriterManager' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 212 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 53 ms [INFO] Squid extraction done: 2212 ms [INFO] Sensor SquidSensor done: 3542 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 5 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 37 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 415 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 98 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 32 seconds [INFO] Finished at: Mon Oct 25 19:17:12 EDT 2010 [INFO] Final Memory: 76M/720M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
