See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/110/>
------------------------------------------ [...truncated 61 lines...] [ERROR] Error fetching link: http://cytoscape.wodaklab.org/javadoc/package-list. Ignored it. Loading source files for package org.cytoscape.plugin... Constructing Javadoc information... Standard Doclet version 1.6.0_20 Building tree for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/org/cytoscape/plugin//CyPlugin.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/org/cytoscape/plugin//CyPluginAdapter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/org/cytoscape/plugin//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/org/cytoscape/plugin//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/org/cytoscape/plugin//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/constant-values.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/org/cytoscape/plugin//class-use/CyPluginAdapter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/org/cytoscape/plugin//class-use/CyPlugin.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/org/cytoscape/plugin//package-use.html...> Building index for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/apidocs/stylesheet.css...> [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-sources.jar> [INFO] [assembly:single {execution: make-assembly}] [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/view/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/view/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] org/ already added, skipping [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-jar-with-dependencies.jar> [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/view/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/view/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] org/ already added, skipping [INFO] [jar:test-jar {execution: default}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-tests.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-SNAPSHOT-sources.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-jar-with-dependencies.jar> to /home/bturner/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-SNAPSHOT-jar-with-dependencies.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-tests.jar> to /home/bturner/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-SNAPSHOT-tests.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [INFO] Installing org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-SNAPSHOT.jar [INFO] Installing org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-SNAPSHOT-jar-with-dependencies.jar [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-20101115.011610-21.jar 4K uploaded (plugin-api-3.0.0-alpha2-20101115.011610-21.jar) [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact org.cytoscape:plugin-api' [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot org.cytoscape:plugin-api:3.0.0-alpha2-SNAPSHOT' [INFO] Uploading project information for plugin-api 3.0.0-alpha2-20101115.011610-21 [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-20101115.011610-21-javadoc.jar 27K uploaded (plugin-api-3.0.0-alpha2-20101115.011610-21-javadoc.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-20101115.011610-21-sources.jar 2K uploaded (plugin-api-3.0.0-alpha2-20101115.011610-21-sources.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-20101115.011610-21-jar-with-dependencies.jar 251K uploaded (plugin-api-3.0.0-alpha2-20101115.011610-21-jar-with-dependencies.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/plugin-api-3.0.0-alpha2-20101115.011610-21-tests.jar 4K uploaded (plugin-api-3.0.0-alpha2-20101115.011610-21-tests.jar) [INFO] [bundle:deploy] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Plugin API/modules/org.cytoscape$plugin-api/builds/2010-11-14_20-15-27/archive/org.cytoscape/plugin-api/3.0.0-alpha2-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Plugin API/modules/org.cytoscape$plugin-api/builds/2010-11-14_20-15-27/archive/org.cytoscape/plugin-api/3.0.0-alpha2-20101115.011610-21/plugin-api-3.0.0-alpha2-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Plugin API/modules/org.cytoscape$plugin-api/builds/2010-11-14_20-15-27/archive/org.cytoscape/plugin-api/3.0.0-alpha2-20101115.011610-21/plugin-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Plugin API/modules/org.cytoscape$plugin-api/builds/2010-11-14_20-15-27/archive/org.cytoscape/plugin-api/3.0.0-alpha2-20101115.011610-21/plugin-api-3.0.0-alpha2-SNAPSHOT-sources.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-jar-with-dependencies.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Plugin API/modules/org.cytoscape$plugin-api/builds/2010-11-14_20-15-27/archive/org.cytoscape/plugin-api/3.0.0-alpha2-20101115.011610-21/plugin-api-3.0.0-alpha2-SNAPSHOT-jar-with-dependencies.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20API/ws/trunk/target/plugin-api-3.0.0-alpha2-SNAPSHOT-tests.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Plugin API/modules/org.cytoscape$plugin-api/builds/2010-11-14_20-15-27/archive/org.cytoscape/plugin-api/3.0.0-alpha2-20101115.011610-21/plugin-api-3.0.0-alpha2-SNAPSHOT-tests.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 43 seconds [INFO] Finished at: Sun Nov 14 20:16:12 EST 2010 [INFO] Final Memory: 73M/721M [INFO] ------------------------------------------------------------------------ channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.plugin-api [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.plugin-api [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 317 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 68 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 222 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 46 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 5 ms [INFO] Squid extraction done: 118 ms [INFO] Sensor SquidSensor done: 421 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 24 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 5 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 37 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 133 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.plugin-api [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin The plugin 'org.codehaus.mojo:cobertura-maven-plugin' does not exist or no valid version could be found [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7 seconds [INFO] Finished at: Sun Nov 14 20:16:21 EST 2010 [INFO] Final Memory: 52M/595M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
