See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/489/changes>
Changes: [mes] added input name argument to all readers ------------------------------------------ [...truncated 90 lines...] AU src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiWriter.java A src/main/java/org/cytoscape/psi_mi/internal/plugin/package.html A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A src/main/resources/org A src/main/resources/org/cytoscape A src/main/resources/org/cytoscape/internal A src/main/resources/org/cytoscape/internal/psi_mi A src/main/resources/org/cytoscape/internal/psi_mi/plugin A src/main/resources/org/cytoscape/internal/psi_mi/plugin/plugin.props A src/main/xsd AU src/main/xsd/MIF25.xsd AU src/main/xsd/MIF1.xsd A pom.xml A .settings A .settings/org.eclipse.jdt.core.prefs A .settings/org.maven.ide.eclipse.prefs U . At revision 24631 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. Found mavenVersion 3.0.3 from file jar:file:/R1/tools/maven/apache-maven-3.0.3/lib/maven-core-3.0.3.jar!/META-INF/maven/org.apache.maven/maven-core/pom.properties No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.401.jar:/R1/tools/maven/apache-maven-3.0.3/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /R1/tools/maven/apache-maven-3.0.3 /R1/resources/webservers/tomcat_2/webapps/jenkins/WEB-INF/lib/remoting-1.401.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.401.jar 54483 <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.psi-mi-impl [org.cytoscape.psi_mi] 1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-jaxb2-plugin:0.7.4:generate (mi1) @ psi-mi-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.7.4:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.4:compile, org.codehaus.plexus:plexus-utils:jar:1.1:compile, junit:junit:jar:4.8.1:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.6:compile, com.sun.xml.bind:jaxb-impl:jar:2.1.13:compile, javax.xml.bind:jaxb-api:jar:2.1:compile, javax.xml.stream:stax-api:jar:1.0-2:compile, javax.activation:activation:jar:1.1:compile, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.13.MR2:compile, com.sun.codemodel:codemodel:jar:2.3:compile, com.sun.xml.dtd-parser:dtd-parser:jar:1.1:compile, com.sun.istack:istack-commons-tools:jar:2.2.MR1:compile, org.apache.ant:ant:jar:1.7.0:compile, org.apache.ant:ant-launcher:jar:1.7.0:compile, relaxngDatatype:relaxngDatatype:jar:20020414:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.kohsuke.rngom:rngom:jar:20100718:compile, com.sun.xsom:xsom:jar:20100725:compile, sun.jdk:tools:jar:1.5.0:system] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/src/main/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@b747815 [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/src/main/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@b77b093 [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:org.cytoscape.psi_mi.internal.schema.mi1 [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/src/main/xsd/MIF1.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Cannot find CatalogManager.properties Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/target/generated-sources/xjc].> [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/AttributeListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/AvailabilityType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/BaseLocationType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/BibrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/BioSourceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/CvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/DbReferenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/EntrySet.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ExperimentType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/FeatureType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/FullNameType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/InteractionElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/IntervalType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/LabelType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/NamesType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ObjectFactory.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/OpenCvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/PositionType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ProteinInteractorType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ProteinParticipantType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/RefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/XrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/package-info.java [INFO] Finished execution. [INFO] [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.7.4:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.4:compile, org.codehaus.plexus:plexus-utils:jar:1.1:compile, junit:junit:jar:4.8.1:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.6:compile, com.sun.xml.bind:jaxb-impl:jar:2.1.13:compile, javax.xml.bind:jaxb-api:jar:2.1:compile, javax.xml.stream:stax-api:jar:1.0-2:compile, javax.activation:activation:jar:1.1:compile, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.13.MR2:compile, com.sun.codemodel:codemodel:jar:2.3:compile, com.sun.xml.dtd-parser:dtd-parser:jar:1.1:compile, com.sun.istack:istack-commons-tools:jar:2.2.MR1:compile, org.apache.ant:ant:jar:1.7.0:compile, org.apache.ant:ant-launcher:jar:1.7.0:compile, relaxngDatatype:relaxngDatatype:jar:20020414:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.kohsuke.rngom:rngom:jar:20100718:compile, com.sun.xsom:xsom:jar:20100725:compile, sun.jdk:tools:jar:1.5.0:system] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/src/main/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@2586d9a [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/src/main/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@7b839aa9 [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:org.cytoscape.psi_mi.internal.schema.mi25 [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/src/main/xsd/MIF25.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] --- maven-jaxb2-plugin:0.7.4:generate (mi25) @ psi-mi-impl --- [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/target/generated-sources/xjc].> [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/AttributeListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/AvailabilityType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BaseLocationType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BibrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BioSourceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ConfidenceListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ConfidenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/CvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/DbReferenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/EntrySet.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ExperimentRefListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ExperimentType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/FeatureElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/FullNameType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/InteractionElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/InteractorElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/IntervalType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/LabelType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/NamesType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ObjectFactory.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/OpenCvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ParameterType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ParticipantType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/PositionType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/XrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/package-info.java [INFO] Finished execution. [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ psi-mi-impl --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) @ psi-mi-impl --- [INFO] Compiling 80 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] mojoFailed org.ops4j:maven-pax-plugin:1.5-SNAPSHOT(default-compile) projectFailed org.cytoscape:psi-mi-impl:1.0-SNAPSHOT [JENKINS] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 PSI-MI impl/modules/org.cytoscape$psi-mi-impl/builds/2011-03-30_19-00-42/archive/org.cytoscape/psi-mi-impl/1.0-SNAPSHOT/pom.xml sessionEnded [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 8.610s [INFO] Finished at: Wed Mar 30 19:00:53 EDT 2011 [INFO] Final Memory: 26M/348M [INFO] ------------------------------------------------------------------------ maven builder waiting mavenExecutionResult exceptions not empty org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.ops4j:maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) on project psi-mi-impl: Compilation failure at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:146) at hudson.maven.Maven3Builder.call(Maven3Builder.java:124) at hudson.maven.Maven3Builder.call(Maven3Builder.java:71) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:516) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:114) at org.ops4j.pax.construct.lifecycle.BundleCompilerMojo.execute(BundleCompilerMojo.java:74) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to SCM build trigger -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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