Author: ruschein
Date: 2011-04-06 09:26:39 -0700 (Wed, 06 Apr 2011)
New Revision: 24688
Added:
csplugins/trunk/ucsd/ruschein/genomespace-webstart/
csplugins/trunk/ucsd/ruschein/genomespace-webstart/README.txt
csplugins/trunk/ucsd/ruschein/genomespace-webstart/pom.xml
csplugins/trunk/ucsd/ruschein/genomespace-webstart/src/
Log:
Initial version.
Copied: csplugins/trunk/ucsd/ruschein/genomespace-webstart/README.txt (from rev
24681, cytoscape/tags/parent-2.8.1/webstart/README.txt)
===================================================================
--- csplugins/trunk/ucsd/ruschein/genomespace-webstart/README.txt
(rev 0)
+++ csplugins/trunk/ucsd/ruschein/genomespace-webstart/README.txt
2011-04-06 16:26:39 UTC (rev 24688)
@@ -0,0 +1,8 @@
+
+This project generates a JNLP file and associated jars suitable for running
+Cytoscape as a webstart. To generate things run:
+
+ mvn webstart:jnlp-inline -Dwebstart.url=http://example.com
+
+Note that the "-Dwebstart.url=http://example.com"; argument is manadatory to
+provide the jnlp file with a codebase.
Copied: csplugins/trunk/ucsd/ruschein/genomespace-webstart/pom.xml (from rev
24681, cytoscape/tags/parent-2.8.1/webstart/pom.xml)
===================================================================
--- csplugins/trunk/ucsd/ruschein/genomespace-webstart/pom.xml
(rev 0)
+++ csplugins/trunk/ucsd/ruschein/genomespace-webstart/pom.xml 2011-04-06
16:26:39 UTC (rev 24688)
@@ -0,0 +1,222 @@
+<!-- Test project which creates and signs a jar artifact -->
+<project xmlns="http://maven.apache.org/POM/4.0.0";
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/maven-v4_0_0.xsd";>
+ <modelVersion>4.0.0</modelVersion>
+
+ <parent>
+ <groupId>cytoscape</groupId>
+ <artifactId>parent</artifactId>
+ <version>2.8.1</version>
+ </parent>
+
+ <groupId>cytoscape</groupId>
+ <artifactId>genomespace-webstart</artifactId>
+ <packaging>pom</packaging>
+ <name>Cytoscape Webstart for GenomeSpace</name>
+
+ <!-- This is the url used to define the codebase of the jnlp file. -->
+ <url>${webstart.url}</url>
+
+ <!-- bootstrap for cytoscape dependencies, namely the parent POM snapshots
-->
+ <repositories>
+ <repository>
+ <id>cytoscape_snapshots</id>
+ <snapshots>
+ <enabled>true</enabled>
+ </snapshots>
+ <releases>
+ <enabled>false</enabled>
+ </releases>
+ <name>Cytoscape Snapshots</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_releases</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ <enabled>true</enabled>
+ </releases>
+ <name>Cytoscape Releases</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url>
+ </repository>
+ </repositories>
+
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.codehaus.mojo.webstart</groupId>
+ <artifactId>webstart-maven-plugin</artifactId>
+ <version>1.0-beta-1</version>
+ <executions>
+ <execution>
+ <goals>
+ <goal>jnlp-inline</goal>
+ </goals>
+ </execution>
+ </executions>
+ <configuration>
+ <excludeTransitive>true</excludeTransitive>
+
<resourcesDirectory>${project.basedir}/src/main/resources</resourcesDirectory>
+ <libPath>lib</libPath>
+ <jnlp>
+
<inputTemplateResourcePath>${project.basedir}/src/main/jnlp</inputTemplateResourcePath>
+ <inputTemplate>template.vm</inputTemplate>
+ <outputFile>cytoscape.jnlp</outputFile>
+ <mainClass>cytoscape.CyMain</mainClass>
+ </jnlp>
+ <!--
+ If this is your first time using Webstart you must create a
keystore:
+ keytool -genkey -alias cytoscape -keypass secret
+ enter "secret" for the password.
+ The actual keystore file created is assumed to be in:
${user.home}/.keystore
+ -->
+ <sign>
+ <keypass>secret</keypass>
+ <storepass>secret</storepass>
+ <alias>cytoscape</alias>
+ <verify>true</verify>
+ </sign>
+ <verbose>true</verbose>
+ </configuration>
+ </plugin>
+ </plugins>
+ </build>
+
+ <dependencies>
+ <!-- the application -->
+ <dependency>
+ <groupId>cytoscape</groupId>
+ <artifactId>application</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <!-- coreplugins -->
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>advanced-network-merge</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>automatic-layout</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>biomart-client</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>biopax</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>editor</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>equation-functions</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>manual-layout</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>ncbi-client</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>psi-mi</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>rfilters</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>sbml-reader</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>table-import</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>attribute-browser</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>cpath</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>cpath2</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>linkout</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>quickfind</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>filters</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>core-commands</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape.coreplugins</groupId>
+ <artifactId>network-analyzer</artifactId>
+ <version>${version}</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape-temp</groupId>
+ <artifactId>y-layouts</artifactId>
+ <version>1.0.1</version>
+ </dependency>
+ </dependencies>
+
+</project>
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