Author: ruschein
Date: 2011-04-06 13:48:40 -0700 (Wed, 06 Apr 2011)
New Revision: 24689
Modified:
csplugins/trunk/ucsd/ruschein/genomespace-webstart/pom.xml
csplugins/trunk/ucsd/ruschein/genomespace-webstart/src/main/jnlp/template.vm
Log:
Added the GS plugins.
Modified: csplugins/trunk/ucsd/ruschein/genomespace-webstart/pom.xml
===================================================================
--- csplugins/trunk/ucsd/ruschein/genomespace-webstart/pom.xml 2011-04-06
16:26:39 UTC (rev 24688)
+++ csplugins/trunk/ucsd/ruschein/genomespace-webstart/pom.xml 2011-04-06
20:48:40 UTC (rev 24689)
@@ -4,7 +4,7 @@
<parent>
<groupId>cytoscape</groupId>
- <artifactId>parent</artifactId>
+ <artifactId>webstart</artifactId>
<version>2.8.1</version>
</parent>
@@ -84,139 +84,17 @@
</build>
<dependencies>
- <!-- the application -->
<dependency>
<groupId>cytoscape</groupId>
- <artifactId>application</artifactId>
- <version>${version}</version>
+ <artifactId>genomespace-libs-plugin</artifactId>
+ <version>1.0-SNAPSHOT</version>
<classifier>jar-with-dependencies</classifier>
</dependency>
- <!-- coreplugins -->
<dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>advanced-network-merge</artifactId>
- <version>${version}</version>
+ <groupId>cytoscape</groupId>
+ <artifactId>genomespace-plugin</artifactId>
+ <version>1.0-SNAPSHOT</version>
<classifier>jar-with-dependencies</classifier>
</dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>automatic-layout</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>biomart-client</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>biopax</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>editor</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>equation-functions</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>manual-layout</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>ncbi-client</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>psi-mi</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>rfilters</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>sbml-reader</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>table-import</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>attribute-browser</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>cpath</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>cpath2</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>linkout</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>quickfind</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>filters</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>core-commands</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape.coreplugins</groupId>
- <artifactId>network-analyzer</artifactId>
- <version>${version}</version>
- <classifier>jar-with-dependencies</classifier>
- </dependency>
- <dependency>
- <groupId>cytoscape-temp</groupId>
- <artifactId>y-layouts</artifactId>
- <version>1.0.1</version>
- </dependency>
</dependencies>
-
</project>
Modified:
csplugins/trunk/ucsd/ruschein/genomespace-webstart/src/main/jnlp/template.vm
===================================================================
---
csplugins/trunk/ucsd/ruschein/genomespace-webstart/src/main/jnlp/template.vm
2011-04-06 16:26:39 UTC (rev 24688)
+++
csplugins/trunk/ucsd/ruschein/genomespace-webstart/src/main/jnlp/template.vm
2011-04-06 20:48:40 UTC (rev 24689)
@@ -52,6 +52,10 @@
<argument>edu.ucsd.bioeng.coreplugin.tableImport.TableImportPlugin</argument>
<argument>-p</argument>
<argument>yfiles.YFilesLayoutPlugin</argument>
+ <argument>-p</argument>
+ <argument>cytoscape.genomespace.libs.GenomeSpaceLibsPlugin</argument>
+ <argument>-p</argument>
+ <argument>cytoscape.genomespace.GenomeSpacePlugin</argument>
</application-desc>
</jnlp>
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