See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20biopax-impl/1/>
------------------------------------------
[...truncated 39 lines...]
AU src/main/java/org/cytoscape/biopax/internal/util/ParentFinder.java
AU src/main/java/org/cytoscape/biopax/internal/util/CyNetworkUtil.java
AU src/main/java/org/cytoscape/biopax/internal/util/WebFileConnect.java
AU src/main/java/org/cytoscape/biopax/internal/util/CytoscapeWrapper.java
AU src/main/java/org/cytoscape/biopax/internal/util/CySessionUtil.java
AU src/main/java/org/cytoscape/biopax/internal/util/ExternalLinkUtil.java
A src/main/java/org/cytoscape/biopax/util
AU src/main/java/org/cytoscape/biopax/util/BioPaxUtil.java
AU src/main/java/org/cytoscape/biopax/util/BioPaxVisualStyleUtil.java
AU src/main/java/org/cytoscape/biopax/MapBioPaxToCytoscape.java
A src/main/resources
A src/main/resources/META-INF
A src/main/resources/META-INF/spring
AU src/main/resources/META-INF/spring/bundle-context-osgi.xml
AU src/main/resources/META-INF/spring/bundle-context.xml
A src/main/resources/org
A src/main/resources/org/cytoscape
A src/main/resources/org/cytoscape/biopax
A src/main/resources/org/cytoscape/biopax/internal
AU
src/main/resources/org/cytoscape/biopax/internal/phos-node-selected-top.jpg
AU
src/main/resources/org/cytoscape/biopax/internal/phos-node-selected-bottom.jpg
AU
src/main/resources/org/cytoscape/biopax/internal/phos-node-selected-left.jpg
A src/main/resources/org/cytoscape/biopax/internal/view
AU src/main/resources/org/cytoscape/biopax/internal/view/info.gif
AU src/main/resources/org/cytoscape/biopax/internal/view/legend.html
AU src/main/resources/org/cytoscape/biopax/internal/view/legend.png
AU src/main/resources/org/cytoscape/biopax/internal/view/legend.gif
AU
src/main/resources/org/cytoscape/biopax/internal/view/binary_legend.html
AU src/main/resources/org/cytoscape/biopax/internal/view/glasses.gif
AU src/main/resources/org/cytoscape/biopax/internal/view/read_obj.gif
AU src/main/resources/org/cytoscape/biopax/internal/phos-node.jpg
AU
src/main/resources/org/cytoscape/biopax/internal/phos-node-selected-right.jpg
AU pom.xml
At revision 24722
Found mavenVersion 3.0.3 from file
jar:file:/R1/tools/maven/apache-maven-3.0.3/lib/maven-core-3.0.3.jar!/META-INF/maven/org.apache.maven/maven-core/pom.properties
No emails were triggered.
Parsing POMs
Discovered a new module org.cytoscape:biopax-impl org.cytoscape.biopax-impl
[org.cytoscape.biopax]
[trunk] $ java -cp
/R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.401.jar:/R1/tools/maven/apache-maven-3.0.3/boot/plexus-classworlds-2.4.jar
org.jvnet.hudson.maven3.agent.Maven3Main /R1/tools/maven/apache-maven-3.0.3
/R1/resources/webservers/tomcat_2/webapps/jenkins/WEB-INF/lib/remoting-1.401.jar
/R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.401.jar
47424
<===[HUDSON REMOTING CAPACITY]===> channel started
Executing Maven: -B -f
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20biopax-impl/ws/trunk/pom.xml>
deploy
[INFO] Scanning for projects...
[WARNING]
[WARNING] Some problems were encountered while building the effective model for
org.cytoscape:biopax-impl:bundle:1.0-SNAPSHOT
[WARNING] 'build.plugins.plugin.version' for
org.apache.maven.plugins:maven-javadoc-plugin is missing. @
org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 57, column 12
[WARNING] 'build.plugins.plugin.version' for
org.apache.maven.plugins:maven-compiler-plugin is missing. @
org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 38, column 12
[WARNING] 'build.plugins.plugin.version' for
org.apache.maven.plugins:maven-source-plugin is missing. @
org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 82, column 12
[WARNING] The expression ${pom.version} is deprecated. Please use
${project.version} instead.
[WARNING] 'reporting.plugins.plugin.version' for
org.apache.maven.plugins:maven-pmd-plugin is missing. @
org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 262, column 12
[WARNING] 'reporting.plugins.plugin.version' for
org.codehaus.mojo:cobertura-maven-plugin is missing. @
org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 276, column 12
[WARNING] 'reporting.plugins.plugin.version' for
org.codehaus.mojo:jdepend-maven-plugin is missing. @
org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 287, column 12
[WARNING] 'reporting.plugins.plugin.version' for
org.apache.maven.plugins:maven-javadoc-plugin is missing. @
org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 291, column 12
[WARNING] 'reporting.plugins.plugin.version' for
org.codehaus.mojo:jxr-maven-plugin is missing. @
org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 305, column 12
[WARNING] 'reporting.plugins.plugin.version' for
org.apache.maven.plugins:maven-surefire-plugin is missing. @
org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 309, column 12
[WARNING] 'reporting.plugins.plugin.version' for
org.apache.maven.plugins:maven-surefire-report-plugin is missing. @
org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 317, column 12
[WARNING] 'pluginRepositories.pluginRepository.layout' for
maven-repository.dev.java.net uses the unsupported value 'legacy', artifact
resolution might fail. @ org.cytoscape:parent:3.0.0-alpha3,
/home/bturner/.m2/repository/org/cytoscape/parent/3.0.0-alpha3/parent-3.0.0-alpha3.pom,
line 236, column 12
[WARNING]
[WARNING] It is highly recommended to fix these problems because they threaten
the stability of your build.
[WARNING]
[WARNING] For this reason, future Maven versions might no longer support
building such malformed projects.
[WARNING]
[INFO]
[INFO] ------------------------------------------------------------------------
[WARNING] Could not transfer metadata
org.apache.maven.plugins:maven-compiler-plugin/maven-metadata.xml from/to
maven-repository.dev.java.net (http://download.java.net/maven/1): No connector
available to access repository maven-repository.dev.java.net
(http://download.java.net/maven/1) of type legacy using the available factories
WagonRepositoryConnectorFactory
[INFO] Building org.cytoscape.biopax-impl
[org.cytoscape.biopax] 1.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[WARNING] Could not transfer metadata
org.apache.maven.plugins:maven-javadoc-plugin/maven-metadata.xml from/to
maven-repository.dev.java.net (http://download.java.net/maven/1): No connector
available to access repository maven-repository.dev.java.net
(http://download.java.net/maven/1) of type legacy using the available factories
WagonRepositoryConnectorFactory
[WARNING] Could not transfer metadata
org.apache.maven.plugins:maven-source-plugin/maven-metadata.xml from/to
maven-repository.dev.java.net (http://download.java.net/maven/1): No connector
available to access repository maven-repository.dev.java.net
(http://download.java.net/maven/1) of type legacy using the available factories
WagonRepositoryConnectorFactory
[WARNING] Could not transfer metadata
org.apache.maven.plugins:maven-install-plugin/maven-metadata.xml from/to
maven-repository.dev.java.net (http://download.java.net/maven/1): No connector
available to access repository maven-repository.dev.java.net
(http://download.java.net/maven/1) of type legacy using the available factories
WagonRepositoryConnectorFactory
[WARNING] Could not transfer metadata
org.apache.maven.plugins:maven-resources-plugin/maven-metadata.xml from/to
maven-repository.dev.java.net (http://download.java.net/maven/1): No connector
available to access repository maven-repository.dev.java.net
(http://download.java.net/maven/1) of type legacy using the available factories
WagonRepositoryConnectorFactory
[WARNING] Could not transfer metadata
org.apache.maven.plugins:maven-surefire-plugin/maven-metadata.xml from/to
maven-repository.dev.java.net (http://download.java.net/maven/1): No connector
available to access repository maven-repository.dev.java.net
(http://download.java.net/maven/1) of type legacy using the available factories
WagonRepositoryConnectorFactory
[WARNING] Could not transfer metadata
org.apache.maven.plugins:maven-deploy-plugin/maven-metadata.xml from/to
maven-repository.dev.java.net (http://download.java.net/maven/1): No connector
available to access repository maven-repository.dev.java.net
(http://download.java.net/maven/1) of type legacy using the available factories
WagonRepositoryConnectorFactory
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
biopax-impl ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 14 resources
[INFO]
[INFO] --- maven-pax-plugin:1.4:compile (default-compile) @ biopax-impl ---
mojoFailed org.ops4j:maven-pax-plugin:1.4(default-compile)
projectFailed org.cytoscape:biopax-impl:1.0-SNAPSHOT
[JENKINS] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20biopax-impl/ws/trunk/pom.xml>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3
biopax-impl/modules/org.cytoscape$biopax-impl/builds/2011-04-08_14-37-16/archive/org.cytoscape/biopax-impl/1.0-SNAPSHOT/pom.xml
sessionEnded
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2.871s
[INFO] Finished at: Fri Apr 08 14:37:22 EDT 2011
[INFO] Final Memory: 13M/155M
[INFO] ------------------------------------------------------------------------
maven builder waiting
mavenExecutionResult exceptions not empty
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal
org.ops4j:maven-pax-plugin:1.4:compile (default-compile) on project
biopax-impl: Execution default-compile of goal
org.ops4j:maven-pax-plugin:1.4:compile failed: An API incompatibility was
encountered while executing org.ops4j:maven-pax-plugin:1.4:compile:
java.lang.NoSuchMethodError:
org.apache.maven.project.MavenProject.addPlugin(Lorg/apache/maven/model/Plugin;)V
-----------------------------------------------------
realm = plugin>org.ops4j:maven-pax-plugin:1.4
strategy = org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy
urls[0] =
file:/home/bturner/.m2/repository/org/ops4j/maven-pax-plugin/1.4/maven-pax-plugin-1.4.jar
urls[1] =
file:/home/bturner/.m2/repository/org/apache/maven/archetype/maven-archetype-core/1.0-alpha-7/maven-archetype-core-1.0-alpha-7.jar
urls[2] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-velocity/1.1.2/plexus-velocity-1.1.2.jar
urls[3] =
file:/home/bturner/.m2/repository/commons-collections/commons-collections/2.0/commons-collections-2.0.jar
urls[4] =
file:/home/bturner/.m2/repository/commons-logging/commons-logging-api/1.0.4/commons-logging-api-1.0.4.jar
urls[5] =
file:/home/bturner/.m2/repository/velocity/velocity/1.4/velocity-1.4.jar
urls[6] =
file:/home/bturner/.m2/repository/velocity/velocity-dep/1.4/velocity-dep-1.4.jar
urls[7] = file:/home/bturner/.m2/repository/dom4j/dom4j/1.6.1/dom4j-1.6.1.jar
urls[8] =
file:/home/bturner/.m2/repository/xml-apis/xml-apis/1.0.b2/xml-apis-1.0.b2.jar
urls[9] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/maven-downloader/1.0/maven-downloader-1.0.jar
urls[10] =
file:/home/bturner/.m2/repository/org/apache/maven/plugins/maven-compiler-plugin/2.0.2/maven-compiler-plugin-2.0.2.jar
urls[11] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-compiler-javac/1.5.3/plexus-compiler-javac-1.5.3.jar
urls[12] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-compiler-api/1.5.3/plexus-compiler-api-1.5.3.jar
urls[13] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-compiler-manager/1.5.3/plexus-compiler-manager-1.5.3.jar
urls[14] =
file:/home/bturner/.m2/repository/org/apache/maven/plugins/maven-eclipse-plugin/2.5.1/maven-eclipse-plugin-2.5.1.jar
urls[15] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-interactivity-jline/1.0-alpha-5/plexus-interactivity-jline-1.0-alpha-5.jar
urls[16] = file:/home/bturner/.m2/repository/jline/jline/0.9.1/jline-0.9.1.jar
urls[17] =
file:/home/bturner/.m2/repository/org/apache/maven/maven-archiver/2.2/maven-archiver-2.2.jar
urls[18] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-resources/1.0-alpha-4/plexus-resources-1.0-alpha-4.jar
urls[19] =
file:/home/bturner/.m2/repository/org/eclipse/core/resources/3.3.0-v20070604/resources-3.3.0-v20070604.jar
urls[20] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/maven-osgi/0.2.0/maven-osgi-0.2.0.jar
urls[21] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/file-management/1.2/file-management-1.2.jar
urls[22] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/maven-shared-io/1.1/maven-shared-io-1.1.jar
urls[23] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-utils/1.4.7/plexus-utils-1.4.7.jar
urls[24] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-archiver/1.0-alpha-7/plexus-archiver-1.0-alpha-7.jar
urls[25] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-interactivity-api/1.0-alpha-5/plexus-interactivity-api-1.0-alpha-5.jar
urls[26] = file:/home/bturner/.m2/repository/junit/junit/3.8.1/junit-3.8.1.jar
urls[27] =
file:/home/bturner/.m2/repository/plexus/plexus-utils/1.0.2/plexus-utils-1.0.2.jar
urls[28] =
file:/home/bturner/.m2/repository/biz/aQute/bndlib/0.0.255/bndlib-0.0.255.jar
Number of foreign imports: 1
import: Entry[import from realm
ClassRealm[project>org.cytoscape:biopax-impl:1.0-SNAPSHOT, parent:
ClassRealm[maven.api, parent: null]]]
-----------------------------------------------------
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:225)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
at
org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329)
at
org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239)
at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:146)
at hudson.maven.Maven3Builder.call(Maven3Builder.java:124)
at hudson.maven.Maven3Builder.call(Maven3Builder.java:71)
at hudson.remoting.UserRequest.perform(UserRequest.java:114)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:270)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:619)
Caused by: org.apache.maven.plugin.PluginExecutionException: Execution
default-compile of goal org.ops4j:maven-pax-plugin:1.4:compile failed: An API
incompatibility was encountered while executing
org.ops4j:maven-pax-plugin:1.4:compile: java.lang.NoSuchMethodError:
org.apache.maven.project.MavenProject.addPlugin(Lorg/apache/maven/model/Plugin;)V
-----------------------------------------------------
realm = plugin>org.ops4j:maven-pax-plugin:1.4
strategy = org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy
urls[0] =
file:/home/bturner/.m2/repository/org/ops4j/maven-pax-plugin/1.4/maven-pax-plugin-1.4.jar
urls[1] =
file:/home/bturner/.m2/repository/org/apache/maven/archetype/maven-archetype-core/1.0-alpha-7/maven-archetype-core-1.0-alpha-7.jar
urls[2] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-velocity/1.1.2/plexus-velocity-1.1.2.jar
urls[3] =
file:/home/bturner/.m2/repository/commons-collections/commons-collections/2.0/commons-collections-2.0.jar
urls[4] =
file:/home/bturner/.m2/repository/commons-logging/commons-logging-api/1.0.4/commons-logging-api-1.0.4.jar
urls[5] =
file:/home/bturner/.m2/repository/velocity/velocity/1.4/velocity-1.4.jar
urls[6] =
file:/home/bturner/.m2/repository/velocity/velocity-dep/1.4/velocity-dep-1.4.jar
urls[7] = file:/home/bturner/.m2/repository/dom4j/dom4j/1.6.1/dom4j-1.6.1.jar
urls[8] =
file:/home/bturner/.m2/repository/xml-apis/xml-apis/1.0.b2/xml-apis-1.0.b2.jar
urls[9] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/maven-downloader/1.0/maven-downloader-1.0.jar
urls[10] =
file:/home/bturner/.m2/repository/org/apache/maven/plugins/maven-compiler-plugin/2.0.2/maven-compiler-plugin-2.0.2.jar
urls[11] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-compiler-javac/1.5.3/plexus-compiler-javac-1.5.3.jar
urls[12] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-compiler-api/1.5.3/plexus-compiler-api-1.5.3.jar
urls[13] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-compiler-manager/1.5.3/plexus-compiler-manager-1.5.3.jar
urls[14] =
file:/home/bturner/.m2/repository/org/apache/maven/plugins/maven-eclipse-plugin/2.5.1/maven-eclipse-plugin-2.5.1.jar
urls[15] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-interactivity-jline/1.0-alpha-5/plexus-interactivity-jline-1.0-alpha-5.jar
urls[16] = file:/home/bturner/.m2/repository/jline/jline/0.9.1/jline-0.9.1.jar
urls[17] =
file:/home/bturner/.m2/repository/org/apache/maven/maven-archiver/2.2/maven-archiver-2.2.jar
urls[18] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-resources/1.0-alpha-4/plexus-resources-1.0-alpha-4.jar
urls[19] =
file:/home/bturner/.m2/repository/org/eclipse/core/resources/3.3.0-v20070604/resources-3.3.0-v20070604.jar
urls[20] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/maven-osgi/0.2.0/maven-osgi-0.2.0.jar
urls[21] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/file-management/1.2/file-management-1.2.jar
urls[22] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/maven-shared-io/1.1/maven-shared-io-1.1.jar
urls[23] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-utils/1.4.7/plexus-utils-1.4.7.jar
urls[24] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-archiver/1.0-alpha-7/plexus-archiver-1.0-alpha-7.jar
urls[25] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-interactivity-api/1.0-alpha-5/plexus-interactivity-api-1.0-alpha-5.jar
urls[26] = file:/home/bturner/.m2/repository/junit/junit/3.8.1/junit-3.8.1.jar
urls[27] =
file:/home/bturner/.m2/repository/plexus/plexus-utils/1.0.2/plexus-utils-1.0.2.jar
urls[28] =
file:/home/bturner/.m2/repository/biz/aQute/bndlib/0.0.255/bndlib-0.0.255.jar
Number of foreign imports: 1
import: Entry[import from realm
ClassRealm[project>org.cytoscape:biopax-impl:1.0-SNAPSHOT, parent:
ClassRealm[maven.api, parent: null]]]
-----------------------------------------------------
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:139)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
... 27 more
Caused by: org.apache.maven.plugin.PluginContainerException: An API
incompatibility was encountered while executing
org.ops4j:maven-pax-plugin:1.4:compile: java.lang.NoSuchMethodError:
org.apache.maven.project.MavenProject.addPlugin(Lorg/apache/maven/model/Plugin;)V
-----------------------------------------------------
realm = plugin>org.ops4j:maven-pax-plugin:1.4
strategy = org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy
urls[0] =
file:/home/bturner/.m2/repository/org/ops4j/maven-pax-plugin/1.4/maven-pax-plugin-1.4.jar
urls[1] =
file:/home/bturner/.m2/repository/org/apache/maven/archetype/maven-archetype-core/1.0-alpha-7/maven-archetype-core-1.0-alpha-7.jar
urls[2] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-velocity/1.1.2/plexus-velocity-1.1.2.jar
urls[3] =
file:/home/bturner/.m2/repository/commons-collections/commons-collections/2.0/commons-collections-2.0.jar
urls[4] =
file:/home/bturner/.m2/repository/commons-logging/commons-logging-api/1.0.4/commons-logging-api-1.0.4.jar
urls[5] =
file:/home/bturner/.m2/repository/velocity/velocity/1.4/velocity-1.4.jar
urls[6] =
file:/home/bturner/.m2/repository/velocity/velocity-dep/1.4/velocity-dep-1.4.jar
urls[7] = file:/home/bturner/.m2/repository/dom4j/dom4j/1.6.1/dom4j-1.6.1.jar
urls[8] =
file:/home/bturner/.m2/repository/xml-apis/xml-apis/1.0.b2/xml-apis-1.0.b2.jar
urls[9] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/maven-downloader/1.0/maven-downloader-1.0.jar
urls[10] =
file:/home/bturner/.m2/repository/org/apache/maven/plugins/maven-compiler-plugin/2.0.2/maven-compiler-plugin-2.0.2.jar
urls[11] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-compiler-javac/1.5.3/plexus-compiler-javac-1.5.3.jar
urls[12] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-compiler-api/1.5.3/plexus-compiler-api-1.5.3.jar
urls[13] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-compiler-manager/1.5.3/plexus-compiler-manager-1.5.3.jar
urls[14] =
file:/home/bturner/.m2/repository/org/apache/maven/plugins/maven-eclipse-plugin/2.5.1/maven-eclipse-plugin-2.5.1.jar
urls[15] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-interactivity-jline/1.0-alpha-5/plexus-interactivity-jline-1.0-alpha-5.jar
urls[16] = file:/home/bturner/.m2/repository/jline/jline/0.9.1/jline-0.9.1.jar
urls[17] =
file:/home/bturner/.m2/repository/org/apache/maven/maven-archiver/2.2/maven-archiver-2.2.jar
urls[18] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-resources/1.0-alpha-4/plexus-resources-1.0-alpha-4.jar
urls[19] =
file:/home/bturner/.m2/repository/org/eclipse/core/resources/3.3.0-v20070604/resources-3.3.0-v20070604.jar
urls[20] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/maven-osgi/0.2.0/maven-osgi-0.2.0.jar
urls[21] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/file-management/1.2/file-management-1.2.jar
urls[22] =
file:/home/bturner/.m2/repository/org/apache/maven/shared/maven-shared-io/1.1/maven-shared-io-1.1.jar
urls[23] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-utils/1.4.7/plexus-utils-1.4.7.jar
urls[24] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-archiver/1.0-alpha-7/plexus-archiver-1.0-alpha-7.jar
urls[25] =
file:/home/bturner/.m2/repository/org/codehaus/plexus/plexus-interactivity-api/1.0-alpha-5/plexus-interactivity-api-1.0-alpha-5.jar
urls[26] = file:/home/bturner/.m2/repository/junit/junit/3.8.1/junit-3.8.1.jar
urls[27] =
file:/home/bturner/.m2/repository/plexus/plexus-utils/1.0.2/plexus-utils-1.0.2.jar
urls[28] =
file:/home/bturner/.m2/repository/biz/aQute/bndlib/0.0.255/bndlib-0.0.255.jar
Number of foreign imports: 1
import: Entry[import from realm
ClassRealm[project>org.cytoscape:biopax-impl:1.0-SNAPSHOT, parent:
ClassRealm[maven.api, parent: null]]]
-----------------------------------------------------
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:137)
... 28 more
Caused by: java.lang.NoSuchMethodError:
org.apache.maven.project.MavenProject.addPlugin(Lorg/apache/maven/model/Plugin;)V
at
org.ops4j.pax.construct.lifecycle.BundleCompilerMojo.mergeCompilerConfiguration(BundleCompilerMojo.java:102)
at
org.ops4j.pax.construct.lifecycle.BundleCompilerMojo.execute(BundleCompilerMojo.java:70)
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
... 28 more
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channel stopped
Skipping sonar analysis due to user build trigger
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