See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/1774/>
------------------------------------------ [...truncated 10497 lines...] [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.psi_mi.internal.schema.mi25 [INFO] generateDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/target/generated-sources/xjc/MIF25> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/target/generated-sources/xjc/MIF25/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/src/main/xsd/MIF25.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/target/generated-sources/xjc/MIF25> generatePackage=org.cytoscape.psi_mi.internal.schema.mi25 schemaLanguage=null schemas=[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/src/main/xsd/MIF25.xsd]> bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@179fe76 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/target/generated-sources/xjc/MIF25/META-INF/sun-jaxb.episode]]> Using java.util.ServiceLoader [INFO] File [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/src/main/xsd/MIF25.xsd]> was changed since the last build. [INFO] File [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/pom.xml]> was changed since the last build. [INFO] Checking up-to-date depends [[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/src/main/xsd/MIF25.xsd,> <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/pom.xml]].> [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,349,485,385,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/target/generated-sources/xjc/MIF25].> [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/AttributeListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/AvailabilityType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BaseLocationType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BibrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BioSourceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ConfidenceListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ConfidenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/CvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/DbReferenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/EntrySet.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ExperimentRefListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ExperimentType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/FeatureElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/FullNameType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/InteractionElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/InteractorElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/IntervalType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/LabelType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/NamesType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ObjectFactory.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/OpenCvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ParameterType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ParticipantType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/PositionType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/XrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/package-info.java [INFO] Finished execution. [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 1 resource [INFO] Copying 1 resource [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ psi-mi-impl --- [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ psi-mi-impl --- [INFO] Compiling 85 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/target/classes> [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 14 resources [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ psi-mi-impl --- [INFO] [INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ psi-mi-impl --- [INFO] Compiling 12 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/target/test-classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/src/test/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkViewReaderTest.java>:[53,-1] cannot access org.cytoscape.view.model.View bad class file: org/cytoscape/view/model/View.class(org/cytoscape/view/model:View.class) unable to access file: corrupted zip file [INFO] 1 error [INFO] ------------------------------------------------------------- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$psi-mi-impl/builds/2012-10-05_20-03-50/archive/org.cytoscape/psi-mi-impl/3.0.0-beta2-SNAPSHOT/psi-mi-impl-3.0.0-beta2-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [3.980s] [INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SUCCESS [7.480s] [INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [3.849s] [INFO] Cytoscape Equations Impl (equations-impl) ......... SUCCESS [10.434s] [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SUCCESS [2.395s] [INFO] Cytoscape Model Impl (model-impl) ................. SUCCESS [11.203s] [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SUCCESS [0.422s] [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SUCCESS [4.710s] [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SUCCESS [0.829s] [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS [1:35.157s] [INFO] org.cytoscape.work-impl ........................... SUCCESS [5.216s] [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SUCCESS [15.663s] [INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SUCCESS [12.130s] [INFO] Cytoscape Groups Impl (group-impl) ................ SUCCESS [7.987s] [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SUCCESS [0.595s] [INFO] Cytoscape IO Impl (io-impl) ....................... SUCCESS [18.427s] [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SUCCESS [0.765s] [INFO] Cytoscape Event Impl (event-impl) ................. SUCCESS [10.124s] [INFO] Cytoscape Layout Impl (layout-impl) ............... SUCCESS [6.672s] [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SUCCESS [16.875s] [INFO] Cytoscape Editor Impl (editor-impl) ............... SUCCESS [3.831s] [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [6.959s] [INFO] Cytoscape Filters Impl (filter-impl) .............. SUCCESS [10.550s] [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SUCCESS [6.987s] [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SUCCESS [5.014s] [INFO] Cytoscape Group View Impl (group-view-impl) ....... SUCCESS [9.096s] [INFO] Cytoscape IO Impl Performance (io-impl-performance) SUCCESS [38.101s] [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [6.741s] [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SUCCESS [6.791s] [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SUCCESS [6.249s] [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SUCCESS [9.644s] [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SUCCESS [9.142s] [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SUCCESS [7.040s] [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SUCCESS [8.942s] [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SUCCESS [12.669s] [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SUCCESS [7.786s] [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SUCCESS [5.589s] [INFO] Cytoscape App Impl (app-impl) ..................... SUCCESS [18.959s] [INFO] Cytoscape Presentation Impl (presentation-impl) ... SUCCESS [11.983s] [INFO] Cytoscape Property Impl (property-impl) ........... SUCCESS [5.212s] [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SUCCESS [0.597s] [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... FAILURE [11.564s] [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SKIPPED [INFO] Cytoscape SBML Impl (sbml-impl) ................... SKIPPED [INFO] Cytoscape Search Impl (search-impl) ............... SKIPPED [INFO] Cytoscape Session Impl Parent (session-impl-parent) SKIPPED [INFO] Cytoscape Session Impl (session-impl) ............. SKIPPED [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SKIPPED [INFO] org.cytoscape.work-headless-impl .................. SKIPPED [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SKIPPED [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SKIPPED [INFO] Cytoscape Application Impl (application-impl) ..... SKIPPED [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SKIPPED [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SKIPPED [INFO] Cytoscape Session Impl Integration Test (session-impl-integration-test) SKIPPED [INFO] Cytoscape Help Impl (help-impl) ................... SKIPPED [INFO] Cytoscape Swing Utility Impl (swing-util-impl) .... SKIPPED [INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SKIPPED [INFO] Cytoscape Table Import Impl (table-import-impl) ... SKIPPED [INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SKIPPED [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SKIPPED [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SKIPPED [INFO] Cytoscape NCBI Webservice Impl (webservice-ncbi-client-impl) SKIPPED [INFO] Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) SKIPPED [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SKIPPED [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SKIPPED [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SKIPPED [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SKIPPED [INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7:55.800s [INFO] Finished at: Fri Oct 05 20:11:49 GMT-05:00 2012 [INFO] Final Memory: 105M/266M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:testCompile (default-testCompile) on project psi-mi-impl: Compilation failure <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/src/test/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkViewReaderTest.java>:[53,-1] cannot access org.cytoscape.view.model.View bad class file: org/cytoscape/view/model/View.class(org/cytoscape/view/model:View.class) unable to access file: corrupted zip file cause : Compilation failure <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/src/test/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkViewReaderTest.java>:[53,-1] cannot access org.cytoscape.view.model.View bad class file: org/cytoscape/view/model/View.class(org/cytoscape/view/model:View.class) unable to access file: corrupted zip file Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:testCompile (default-testCompile) on project psi-mi-impl: Compilation failure <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/src/test/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkViewReaderTest.java>:[53,-1] cannot access org.cytoscape.view.model.View bad class file: org/cytoscape/view/model/View.class(org/cytoscape/view/model:View.class) unable to access file: corrupted zip file at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/psi-mi-impl/impl/src/test/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkViewReaderTest.java>:[53,-1] cannot access org.cytoscape.view.model.View bad class file: org/cytoscape/view/model/View.class(org/cytoscape/view/model:View.class) unable to access file: corrupted zip file at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:656) at org.apache.maven.plugin.TestCompilerMojo.execute(TestCompilerMojo.java:161) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to bad build status FAILURE -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
