See <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/280/changes>
Changes: [kono] Version numbers fixed to 3.0.0. [thully] Corrected spelling error and added more developer names. [kono] Changs merged from branch. [kono] Welcome Screen icons are modified for consistency. [jm] Fixes #1641: Removed "Contents���" and "List Available Commands" from Help menu [jm] Fixes #1641: Actually fixed the help menu [kono] Create New Network button fixed. [kono] Null check added for menu item enable/disable section. [kono] fixes #1655 String table column will be copied to new merged table. [kono] Fit Label function is modified to support NAME instead of SUID. [pwang] Fixed bug# 1668 [scooter] Update to custom graphics api to support view -- see r31052 [clopes] Refs #1691 : Patch to 3.0 release branch [scooter] Updated CustomGraphics stuff to simplify signature of generics [clopes] Fixes #1696 (Arrow shapes not imported from Cy2 XGMML) [jm] References #1684: Backported r31072. Updated licenses [jm] References #1684: Fixed files that didn't patch cleanly the first time around [oriol] Fixing bug #1698. Checking if columns list is really different change it [jm] Updated with the latest version of the manual from the wiki [kono] Manual updated for release. [keiono] Eclipse setting files will be ignored. [keiono] Hotfix branch for 3.0.1 created. SCM location is set to github. [keiono] Eclipse setting files will be ignored. [keiono] Test script to create new hotfix branch had been added. [keiono] Broken line removed. [keiono] Broken line removed. [scooter] Fixes to support UI improvements to menu bars and list tunables [keiono] Comments added to the script. ------------------------------------------ [...truncated 84438 lines...] [INFO] Initializer CoberturaMavenInitializer done: 0 ms [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 457 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 719 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 276 ms [INFO] Java Squid scan... [INFO] Java Squid scan done: 5 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 165 ms [INFO] Squid extraction done: 398 ms [INFO] Sensor SquidSensor done: 1418 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Found findbugs plugin: file:/tmp/sonar-batch1476641877173932893965743183703080/plugins/findbugs/META-INF/lib/findbugs-1.3.9.jar [INFO] Loaded plugin edu.umd.cs.findbugs.plugins.core [INFO] Findbugs output report: <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-analyzer-impl/target/sonar/findbugs-result.xml> The following classes needed for analysis were missing: org.osgi.util.tracker.ServiceTracker org.freehep.util.UserProperties org.freehep.util.Value org.freehep.xml.util.XMLWriter org.freehep.util.io.WriterOutputStream org.freehep.util.io.Base64OutputStream [INFO] Execute Findbugs 1.3.9 done: 9126 ms [INFO] Sensor FindbugsSensor done: 9182 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-analyzer-impl/target/surefire-reports> [INFO] Sensor SurefireSensor done: 0 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 102 ms [INFO] Sensor CheckstyleSensor... [INFO] Execute Checkstyle 5.1... [INFO] Checkstyle configuration: <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-analyzer-impl/target/sonar/checkstyle.xml> [INFO] Execute Checkstyle 5.1 done: 1118 ms [INFO] Sensor CheckstyleSensor done: 1119 ms [INFO] Sensor PmdSensor... [INFO] Execute PMD 4.2.5... [INFO] Java version: 1.6 [INFO] PMD configuration: <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-analyzer-impl/target/sonar/pmd.xml> [INFO] PMD output report: <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-analyzer-impl/target/sonar/pmd-result.xml> [INFO] Execute PMD 4.2.5 done: 7804 ms [INFO] Sensor PmdSensor done: 7929 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 253 ms [INFO] Sensor ProfileEventsSensor... [INFO] Sensor ProfileEventsSensor done: 11 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 13 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 6 ms [INFO] Sensor CoberturaSensor... [INFO] parsing <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-analyzer-impl/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 368 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 44 ms [INFO] Execute decorators... [INFO] ------------- Analyzing Cytoscape Merge Impl (network-merge-impl) [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Compare to previous analysis (2013-02-05) [INFO] Compare over 5 days (2013-02-08, analysis of 2013-02-05 15:14:28.0) [INFO] Compare over 30 days (2013-01-14, analysis of 2013-02-02 08:55:01.0) [INFO] Initializer FindbugsMavenInitializer... [INFO] Initializer FindbugsMavenInitializer done: 0 ms [INFO] Initializer MavenInitializer... [INFO] Java source version: 1.6 [INFO] Java target version: 1.6 [INFO] Source encoding: UTF-8 [INFO] Initializer MavenInitializer done: 1 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] Execute org.codehaus.mojo:cobertura-maven-plugin:2.5:cobertura... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Merge Impl (network-merge-impl) 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] >>> cobertura-maven-plugin:2.5:cobertura (default-cli) @ network-merge-impl >>> [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ network-merge-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 12 resources [INFO] [INFO] --- maven-compiler-plugin:2.5.1:compile (default-compile) @ network-merge-impl --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- cobertura-maven-plugin:2.5:instrument (default-cli) @ network-merge-impl --- [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 75 classes. Instrumenting 75 files to <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-merge-impl/target/generated-classes/cobertura> [cobertura] WARN [main] net.sourceforge.cobertura.instrument.ClassInstrumenter - No line number information found for class org.cytoscape.network.merge.internal.ui.CollapsiblePanel$1. Perhaps you need to compile with debug=true? Cobertura: Saved information on 75 classes. Instrument time: 705ms [INFO] Instrumentation was successful. [INFO] NOT adding cobertura ser file to attached artifacts list. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ network-merge-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-merge-impl/src/test/resources> [INFO] [INFO] --- maven-compiler-plugin:2.5.1:testCompile (default-testCompile) @ network-merge-impl --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ network-merge-impl --- [INFO] No tests to run. [INFO] [INFO] <<< cobertura-maven-plugin:2.5:cobertura (default-cli) @ network-merge-impl <<< [INFO] [INFO] --- cobertura-maven-plugin:2.5:cobertura (default-cli) @ network-merge-impl --- [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 75 classes. Report time: 399ms [INFO] Cobertura Report generation was successful. [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6:49.361s [INFO] Finished at: Wed Feb 13 12:32:13 GMT-05:00 2013 [INFO] Final Memory: 79M/283M [INFO] ------------------------------------------------------------------------ [INFO] Execute org.codehaus.mojo:cobertura-maven-plugin:2.5:cobertura done: 1924 ms [INFO] Execute maven plugin cobertura-maven-plugin done: 1924 ms [INFO] Initializer CoberturaMavenInitializer... [INFO] Initializer CoberturaMavenInitializer done: 0 ms [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 122 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 152 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 55 ms [INFO] Java Squid scan... [INFO] Java Squid scan done: 0 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 19 ms [INFO] Squid extraction done: 48 ms [INFO] Sensor SquidSensor done: 264 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Found findbugs plugin: file:/tmp/sonar-batch1476641877173932893965743183703080/plugins/findbugs/META-INF/lib/findbugs-1.3.9.jar [INFO] Loaded plugin edu.umd.cs.findbugs.plugins.core [INFO] Findbugs output report: <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-merge-impl/target/sonar/findbugs-result.xml> The following classes needed for analysis were missing: org.osgi.util.tracker.ServiceTracker [INFO] Execute Findbugs 1.3.9 done: 4038 ms [INFO] Sensor FindbugsSensor done: 4055 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-merge-impl/target/surefire-reports> [INFO] Sensor SurefireSensor done: 0 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 25 ms [INFO] Sensor CheckstyleSensor... [INFO] Execute Checkstyle 5.1... [INFO] Checkstyle configuration: <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-merge-impl/target/sonar/checkstyle.xml> [INFO] Execute Checkstyle 5.1 done: 569 ms [INFO] Sensor CheckstyleSensor done: 570 ms [INFO] Sensor PmdSensor... [INFO] Execute PMD 4.2.5... [INFO] Java version: 1.6 [INFO] PMD configuration: <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-merge-impl/target/sonar/pmd.xml> [INFO] PMD output report: <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-merge-impl/target/sonar/pmd-result.xml> [INFO] Execute PMD 4.2.5 done: 3248 ms [INFO] Sensor PmdSensor done: 3276 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 122 ms [INFO] Sensor ProfileEventsSensor... [INFO] Sensor ProfileEventsSensor done: 2 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 7 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 2 ms [INFO] Sensor CoberturaSensor... [INFO] parsing <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/network-merge-impl/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 41 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 8 ms [INFO] Execute decorators... [INFO] ------------- Analyzing Cytoscape App Impl (app-impl) [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Compare to previous analysis (2013-02-05) [INFO] Compare over 5 days (2013-02-08, analysis of 2013-02-05 15:14:28.0) [INFO] Compare over 30 days (2013-01-14, analysis of 2013-02-02 08:55:01.0) [INFO] Initializer FindbugsMavenInitializer... [INFO] Initializer FindbugsMavenInitializer done: 0 ms [INFO] Initializer MavenInitializer... [INFO] Java source version: 1.6 [INFO] Java target version: 1.6 [INFO] Source encoding: UTF-8 [INFO] Initializer MavenInitializer done: 0 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] Execute org.codehaus.mojo:cobertura-maven-plugin:2.5:cobertura... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape App Impl (app-impl) 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] >>> cobertura-maven-plugin:2.5:cobertura (default-cli) @ app-impl >>> [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ app-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:2.5.1:compile (default-compile) @ app-impl --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- cobertura-maven-plugin:2.5:instrument (default-cli) @ app-impl --- [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 139 classes. Instrumenting 139 files to <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/app-impl/target/generated-classes/cobertura> [cobertura] WARN [main] net.sourceforge.cobertura.instrument.ClassInstrumenter - No line number information found for class org.cytoscape.app.internal.net.server.AppGetResponder$1. Perhaps you need to compile with debug=true? Cobertura: Saved information on 139 classes. Instrument time: 359ms [INFO] Instrumentation was successful. [INFO] NOT adding cobertura ser file to attached artifacts list. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ app-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/app-impl/src/test/resources> [INFO] [INFO] --- maven-compiler-plugin:2.5.1:testCompile (default-testCompile) @ app-impl --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ app-impl --- [INFO] Surefire report directory: <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/app-impl/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Running org.cytoscape.app.internal.ui.downloadsites.DownloadSitesManagerTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.04 sec Running org.cytoscape.app.internal.net.server.CyHttpdImplTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.1 sec Running org.cytoscape.app.internal.net.server.OriginOptionsBeforeResponseTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec Running org.cytoscape.app.internal.net.server.AddAllowOriginHeaderTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec Running org.cytoscape.app.internal.net.server.AddAccessControlAllowOriginHeaderAfterResponseTest Sonar analysis completed: FAILURE Build step 'Sonar' changed build result to FAILURE Build step 'Sonar' marked build as failure -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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