I'm not really sure either but I'm guessing Juan is asking if there's a way to 
have the ontology in the same dataset as the mapped data so that they can both 
be queried from the D2R Server SPARQL endpoint. As far as I know there isn't a 
way to do that but you could set up a joseki endpoint with a d2rq model and 
configure it to allow the dataset to be defined in the query. Then you can pull 
in the ontology with a  FROM <http://myontology.rdf> or you can dump the 
database into a native store and load the ontology as well. I think someone a 
while ago was asking about setting up d2rq behind joseki and was asked why 
you'd want to do that and this only one of two reasons I can think of why you 
might want to do that. You'll might have to get a somewhat older version of 
joseki since d2rq is built against a now somewhat older revision of jena or you 
can patch d2r to work against the latest jena release. 

If that's what you're looking to do I could provide more details.

--Zach

> -----Original Message-----
> From: Bo Ferri [mailto:[email protected]]
> Sent: Sunday, July 24, 2011 12:46 PM
> To: [email protected]
> Subject: Re: [d2rq-dev] Custom mappings in D2R Server
> 
> Hi Juan,t
> 
> it seems that I probably do not really get what your problem might be
> (all other reading the mailing, you are invited to help me as well ;)
> ).
> 
> Am 24.07.2011 13:32, schrieb Juan Francisco Contreras Gaitan:
> > Hello Bob,
> >
> > I think I didn't explained well. I didn't mean the ontology file is
> > totally useless in general, for example it could be very useful when
> > dumping the data and distribute the full owl with D2RQ.
> 
> An ontology in general is a separate construct that can be utilised in
> a
> D2RQ mapping. For example, when you dump the triples that you will get
> via your mapping and load them into a proper triple store รก la OpenLink
> Virtuoso or Ontotext Big OWLIM then you can apply proper inferencing
> task on these descriptions as well, e.g., deriving sub-class relations.
> 
> >
> > I meant that it is useless within D2R Server, because it ignores it
> > (AFAIK you can't get it to be an argument).
> 
> Well I probably tried to explain you this already in a previous reply.
> AFAIK you cannot do any inferencing with D2R (Richard or someone else
> please correct me here if I'm wrong).
> 
> > Of course you can do a lot
> > of things with the the ontology and D2RQ, but you have to code them
> > manually.
> 
> If you wanna apply an existing (or separately created) ontology in your
> mapping then you have to do this task more or less manually, but this
> is
> more or less the main work one has to do when applying D2R.
> 
> > Topbraid has coded some things for you, and for example you
> > can get the ontology and its instances via D2RQ. All you have to do
> is
> > defining an ontology and a mapping. I'm asking if something similar
> is
> > possible with D2R Server.
> 
> Yes, and I think this is more or less the essence I tried to explain
> you
> via my previous e-mails ;)
> 
> >
> > So, my question would be if the ontology file is useful with D2R
> Server
> > directly (like with Topbraid, for example)? Or you have to use D2RQ
> > Engine to publish your full ontology info in the web?
> 
> Usually you would publish your ontology specification separately (see
> [1]).
> 
> Cheers,
> 
> 
> Bob
> 
> 
> [1] http://www.w3.org/TR/swbp-vocab-pub/
> 
> -----------------------------------------------------------------------
> -------
> Magic Quadrant for Content-Aware Data Loss Prevention
> Research study explores the data loss prevention market. Includes in-
> depth
> analysis on the changes within the DLP market, and the criteria used to
> evaluate the strengths and weaknesses of these DLP solutions.
> http://www.accelacomm.com/jaw/sfnl/114/51385063/
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------------------------------------------------------------------------------
Magic Quadrant for Content-Aware Data Loss Prevention
Research study explores the data loss prevention market. Includes in-depth
analysis on the changes within the DLP market, and the criteria used to
evaluate the strengths and weaknesses of these DLP solutions.
http://www.accelacomm.com/jaw/sfnl/114/51385063/
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