Hi Andrew
I guess this depends on what you are using the RNG for. What are you
using it for? The registry needs the result from a sequence request to
conform to the sequence.rng as it is on the registry as if a sequence
is requested the test region put into the registry should return a
sequence, if it returns an ERRORSEGMENT the the registry wants that
reported as invalid. If I add the errorsegment to that document as you
suggest the registry won't pick it up as invalid.
On 1 Mar 2011, at 15:19, Andrew Roberts wrote:
Alright, now I'm hitting the lack of support for ERRORSEGMENT
within the sequence command response. I think there needs to be a
choice inside the oneOrMore, so that elements can be SEQUENCE or
ERRORSEGMENT. I attached what I'm using as a testing schema in the
meantime, hopefully it's helpful.
Andrew
<sequence.rng>
On Mar 1, 2011, at 5:09 AM, Jonathan Warren wrote:
This is fixed now.
On 28 Feb 2011, at 18:34, Andrew Roberts wrote:
Hello,
I'm working on some validations, and I think I may have found an
error in sequence.rng (www.dasregistry.org/validation1.6/sequence.rng)
. It appears that this schema makes no provision for the actual
text data that belongs to the sequence element (i.e. the bases
themselves). Is this a known issue?
If not, I think the solution is to add a <text/> element inside
the sequence element. Line 10 should read,
<attribute name="start"><data type="integer"></data></
attribute><attribute name="stop"><data type="integer"></data></
attribute><optional><attribute name="version"><text></text></
attribute></optional><optional><attribute name="label"><text></
text></attribute></optional><text/></element>
Cheers,
Andrew
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Jonathan Warren
Senior Developer and DAS coordinator
blog: http://biodasman.wordpress.com/
[email protected]
Ext: 2314
Telephone: 01223 492314
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The Wellcome Trust Sanger Institute is operated by Genome
ResearchLimited, a charity registered in England with number
1021457 and acompany registered in England with number 2742969,
whose registeredoffice is 215 Euston Road, London, NW1 2BE.
Jonathan Warren
Senior Developer and DAS coordinator
blog: http://biodasman.wordpress.com/
[email protected]
Ext: 2314
Telephone: 01223 492314
--
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.
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