If your data source is publicaly available you can test it by making a
request like this:
http://www.dasregistry.org/validate?url=http://das.sanger.ac.uk/das/otter_das/&testcode=22:19173435,19372173
which returns properties for the status of each command. Or you can
use the validation page on the registry interface to do the same thing.
Some people here are working on some XSD documents in order to use
JAXB which will probably be of use to you as they should be structured
more as you suggest.
We maybe need to make it more clear how we use these RNG documents in
the documentation.
Thanks for the feedback!
On 1 Mar 2011, at 16:20, Andrew Roberts wrote:
Ah, interesting. I'm exercising my implementations of the das
commands, and then validating the XML against the rng as a
correctness test. I had been assuming that the rng was a description
of all possible server responses, including error cases, but I now
see what you guys are using them for.
Thanks!
On Mar 1, 2011, at 10:54 AM, Jonathan Warren <[email protected]>
wrote:
Hi Andrew
I guess this depends on what you are using the RNG for. What are
you using it for? The registry needs the result from a sequence
request to conform to the sequence.rng as it is on the registry as
if a sequence is requested the test region put into the registry
should return a sequence, if it returns an ERRORSEGMENT the the
registry wants that reported as invalid. If I add the errorsegment
to that document as you suggest the registry won't pick it up as
invalid.
On 1 Mar 2011, at 15:19, Andrew Roberts wrote:
Alright, now I'm hitting the lack of support for ERRORSEGMENT
within the sequence command response. I think there needs to be a
choice inside the oneOrMore, so that elements can be SEQUENCE or
ERRORSEGMENT. I attached what I'm using as a testing schema in
the meantime, hopefully it's helpful.
Andrew
<sequence.rng>
On Mar 1, 2011, at 5:09 AM, Jonathan Warren wrote:
This is fixed now.
On 28 Feb 2011, at 18:34, Andrew Roberts wrote:
Hello,
I'm working on some validations, and I think I may have found
an error in sequence.rng (www.dasregistry.org/validation1.6/sequence.rng)
. It appears that this schema makes no provision for the actual
text data that belongs to the sequence element (i.e. the bases
themselves). Is this a known issue?
If not, I think the solution is to add a <text/> element
inside the sequence element. Line 10 should read,
<attribute name="start"><data type="integer"></data></
attribute><attribute name="stop"><data type="integer"></data></
attribute><optional><attribute name="version"><text></text></
attribute></optional><optional><attribute name="label"><text></
text></attribute></optional><text/></element>
Cheers,
Andrew
_______________________________________________
DAS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/das
Jonathan Warren
Senior Developer and DAS coordinator
blog: http://biodasman.wordpress.com/
[email protected]
Ext: 2314
Telephone: 01223 492314
--
The Wellcome Trust Sanger Institute is operated by Genome
ResearchLimited, a charity registered in England with number
1021457 and acompany registered in England with number 2742969,
whose registeredoffice is 215 Euston Road, London, NW1 2BE.
Jonathan Warren
Senior Developer and DAS coordinator
blog: http://biodasman.wordpress.com/
[email protected]
Ext: 2314
Telephone: 01223 492314
--
The Wellcome Trust Sanger Institute is operated by Genome
ResearchLimited, a charity registered in England with number
1021457 and acompany registered in England with number 2742969,
whose registeredoffice is 215 Euston Road, London, NW1 2BE.
Jonathan Warren
Senior Developer and DAS coordinator
blog: http://biodasman.wordpress.com/
[email protected]
Ext: 2314
Telephone: 01223 492314
--
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.
_______________________________________________
DAS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/das
