Dear all,
Following Wolfgang’s suggestion to use Mesquite for improving the mesh
quality in my problem (see
https://groups.google.com/forum/#!searchin/dealii/Mesquite%7Csort:relevance/dealii/f3jWQ7DPeYA/aCCgEUSVAQAJ
<https://groups.google.com/forum/%23!searchin/dealii/Mesquite%7Csort:relevance/dealii/f3jWQ7DPeYA/aCCgEUSVAQAJ>
),
I installed Trilinos on my laptop (Mac OS X Yosemite Version 10.10.5).
I had various problems with the installation of the most recent versions of
Trilinos - I were not able to install Trilinos 12.6.2 or 12.6.3 with all
the required packages for deal.ii, and for some reason Trilinos 12.6.1 does
not include Mesquite. I ended up with installing Trilinos 12.4.2 and
installing dealii 8.4.1 with it. Everything in the installation seemed to
be fine, but when I run “make test”, all the tests failed. You may see the
attached log file.
Does anybody have any idea how to fix this problem?
Thanks,
Oded
--
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[HANDLER_OUTPUT]
Test project
/Users/yaakobioy/dealii/dealii-8-4-1/dealii-8-4-1_Build/tests/quick_tests
Start 1: step.debug
1/4 Test #1: step.debug .......................***Failed 14.93 sec
/bin/sh: line 1: 52638 Trace/BPT trap: 5 ./step.debug > step.debug-OK 2>&1
make[7]: *** [tests/quick_tests/CMakeFiles/step.debug.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step.debug.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step.debug.run.dir/rule] Error 2
make[4]: *** [step.debug.run] Error 2
Test step.debug: RUN
=============================== OUTPUT BEGIN ===============================
Scanning dependencies of target kill-step.debug-OK
[ 0%] Built target kill-step.debug-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 0%] Built target obj_opencascade.debug
[ 0%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X.debug
[ 0%] Built target obj_boost_iostreams.debug
[ 9%] Built target obj_umfpack_I_UMF.debug
[ 9%] Built target obj_boost_system.debug
[ 9%] Built target obj_umfpack_DI_TRIPLET_MAP_X.debug
[ 11%] Built target obj_umfpack_DL_ASSEMBLE.debug
[ 11%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X.debug
[ 11%] Built target obj_distributed.inst
[ 12%] Built target obj_distributed.debug
[ 18%] Built target obj_boost_serialization.debug
[ 22%] Built target obj_numerics.inst
[ 27%] Built target obj_numerics.debug
[ 35%] Built target obj_fe.inst
[ 40%] Built target obj_fe.debug
[ 42%] Built target obj_hp.inst
[ 42%] Built target obj_hp.debug
[ 46%] Built target obj_lac.inst
[ 53%] Built target obj_lac.debug
[ 55%] Built target obj_dofs.inst
[ 57%] Built target obj_dofs.debug
[ 57%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX.debug
[ 57%] Built target obj_umfpack_DL_STORE.debug
[ 57%] Built target obj_umfpack_DI_STORE.debug
[ 59%] Built target obj_umfpack_DL_TSOLVE.debug
[ 59%] Built target obj_umfpack_GENERIC.debug
[ 59%] Built target obj_muparser.debug
[ 59%] Built target obj_base.inst
[ 68%] Built target obj_base.debug
[ 72%] Built target obj_umfpack_I_UMFPACK.debug
[ 72%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX.debug
[ 72%] Built target obj_umfpack_DI_TSOLVE.debug
[ 72%] Built target obj_umfpack_DL_TRIPLET_MAP_X.debug
[ 72%] Built target obj_umfpack_DI_SOLVE.debug
[ 79%] Built target obj_umfpack_L_UMF.debug
[ 79%] Built target obj_umfpack_DL_SOLVE.debug
[ 81%] Built target obj_grid.inst
[ 83%] Built target obj_grid.debug
[ 83%] Built target obj_umfpack_DI_ASSEMBLE.debug
[ 85%] Built target obj_multigrid.inst
[ 85%] Built target obj_multigrid.debug
[ 90%] Built target obj_tbb.debug
[ 94%] Built target obj_umfpack_L_UMFPACK.debug
[ 94%] Built target obj_amd_global.debug
[ 96%] Built target obj_amd_long.debug
[ 98%] Built target obj_amd_int.debug
[ 98%] Built target obj_algorithms.inst
[100%] Built target obj_algorithms.debug
[100%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target step.debug
[100%] Building CXX object tests/quick_tests/CMakeFiles/step.debug.dir/step.cc.o
[100%] Linking CXX executable step.debug
[100%] Built target step.debug
Scanning dependencies of target step.debug.run
step.debug: RUN failed. Output:
dyld: Library not loaded: libmsqutil.12.dylib
Referenced from:
/Users/yaakobioy/dealii/dealii-8-4-1/dealii-8-4-1_Build/tests/quick_tests/./step.debug
Reason: image not found
step.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/Users/yaakobioy/dealii/dealii-8-4-1/dealii-8-4-1_Source/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 2: step.release
2/4 Test #2: step.release .....................***Failed 14.80 sec
/bin/sh: line 1: 52980 Trace/BPT trap: 5 ./step.release > step.release-OK
2>&1
make[7]: *** [tests/quick_tests/CMakeFiles/step.release.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step.release.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step.release.run.dir/rule] Error 2
make[4]: *** [step.release.run] Error 2
Test step.release: RUN
=============================== OUTPUT BEGIN ===============================
Scanning dependencies of target kill-step.release-OK
[ 0%] Built target kill-step.release-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 0%] Built target obj_opencascade.release
[ 0%] Built target obj_umfpack_DL_TSOLVE.release
[ 0%] Built target obj_boost_iostreams.release
[ 0%] Built target obj_umfpack_DI_TRIPLET_MAP_X.release
[ 0%] Built target obj_boost_system.release
[ 5%] Built target obj_umfpack_I_UMFPACK.release
[ 5%] Built target obj_umfpack_DI_SOLVE.release
[ 7%] Built target obj_umfpack_DI_STORE.release
[ 7%] Built target obj_distributed.inst
[ 8%] Built target obj_distributed.release
[ 12%] Built target obj_boost_serialization.release
[ 12%] Built target obj_base.inst
[ 21%] Built target obj_base.release
[ 21%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X.release
[ 22%] Built target obj_dofs.inst
[ 24%] Built target obj_dofs.release
[ 26%] Built target obj_hp.inst
[ 26%] Built target obj_hp.release
[ 28%] Built target obj_multigrid.inst
[ 29%] Built target obj_multigrid.release
[ 33%] Built target obj_lac.inst
[ 40%] Built target obj_lac.release
[ 47%] Built target obj_fe.inst
[ 54%] Built target obj_fe.release
[ 57%] Built target obj_numerics.inst
[ 63%] Built target obj_numerics.release
[ 63%] Built target obj_umfpack_DL_STORE.release
[ 63%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX.release
[ 63%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X.release
[ 63%] Built target obj_umfpack_GENERIC.release
[ 63%] Built target obj_umfpack_DI_TSOLVE.release
[ 64%] Built target obj_muparser.release
[ 66%] Built target obj_grid.inst
[ 70%] Built target obj_grid.release
[ 70%] Built target obj_umfpack_DL_ASSEMBLE.release
[ 75%] Built target obj_tbb.release
[ 75%] Built target obj_umfpack_DI_ASSEMBLE.release
[ 82%] Built target obj_umfpack_L_UMF.release
[ 89%] Built target obj_umfpack_I_UMF.release
[ 89%] Built target obj_umfpack_DL_SOLVE.release
[ 89%] Built target obj_umfpack_DL_TRIPLET_MAP_X.release
[ 89%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX.release
[ 94%] Built target obj_umfpack_L_UMFPACK.release
[ 96%] Built target obj_amd_long.release
[ 96%] Built target obj_amd_global.release
[ 98%] Built target obj_amd_int.release
[ 98%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.release
[ 98%] Built target obj_matrix_free.inst
[ 98%] Built target obj_matrix_free.release
[ 98%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.release
[100%] Built target deal_II
Scanning dependencies of target step.release
[100%] Building CXX object
tests/quick_tests/CMakeFiles/step.release.dir/step.cc.o
[100%] Linking CXX executable step.release
[100%] Built target step.release
Scanning dependencies of target step.release.run
step.release: RUN failed. Output:
dyld: Library not loaded: libmsqutil.12.dylib
Referenced from:
/Users/yaakobioy/dealii/dealii-8-4-1/dealii-8-4-1_Build/tests/quick_tests/./step.release
Reason: image not found
step.release: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/Users/yaakobioy/dealii/dealii-8-4-1/dealii-8-4-1_Source/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 3: affinity.debug
3/4 Test #3: affinity.debug ...................***Failed 11.15 sec
/bin/sh: line 1: 53321 Trace/BPT trap: 5 ./affinity.debug >
affinity.debug-OK 2>&1
make[7]: *** [tests/quick_tests/CMakeFiles/affinity.debug.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/affinity.debug.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/affinity.debug.run.dir/rule] Error 2
make[4]: *** [affinity.debug.run] Error 2
Test affinity.debug: RUN
=============================== OUTPUT BEGIN ===============================
Scanning dependencies of target kill-affinity.debug-OK
[ 0%] Built target kill-affinity.debug-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 0%] Built target obj_opencascade.debug
[ 0%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X.debug
[ 0%] Built target obj_boost_iostreams.debug
[ 9%] Built target obj_umfpack_I_UMF.debug
[ 9%] Built target obj_boost_system.debug
[ 9%] Built target obj_umfpack_DI_TRIPLET_MAP_X.debug
[ 11%] Built target obj_umfpack_DL_ASSEMBLE.debug
[ 11%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X.debug
[ 11%] Built target obj_distributed.inst
[ 12%] Built target obj_distributed.debug
[ 18%] Built target obj_boost_serialization.debug
[ 22%] Built target obj_numerics.inst
[ 27%] Built target obj_numerics.debug
[ 35%] Built target obj_fe.inst
[ 40%] Built target obj_fe.debug
[ 42%] Built target obj_hp.inst
[ 42%] Built target obj_hp.debug
[ 46%] Built target obj_lac.inst
[ 53%] Built target obj_lac.debug
[ 55%] Built target obj_dofs.inst
[ 57%] Built target obj_dofs.debug
[ 57%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX.debug
[ 57%] Built target obj_umfpack_DL_STORE.debug
[ 57%] Built target obj_umfpack_DI_STORE.debug
[ 59%] Built target obj_umfpack_DL_TSOLVE.debug
[ 59%] Built target obj_umfpack_GENERIC.debug
[ 59%] Built target obj_muparser.debug
[ 59%] Built target obj_base.inst
[ 68%] Built target obj_base.debug
[ 72%] Built target obj_umfpack_I_UMFPACK.debug
[ 72%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX.debug
[ 72%] Built target obj_umfpack_DI_TSOLVE.debug
[ 72%] Built target obj_umfpack_DL_TRIPLET_MAP_X.debug
[ 72%] Built target obj_umfpack_DI_SOLVE.debug
[ 79%] Built target obj_umfpack_L_UMF.debug
[ 79%] Built target obj_umfpack_DL_SOLVE.debug
[ 81%] Built target obj_grid.inst
[ 83%] Built target obj_grid.debug
[ 83%] Built target obj_umfpack_DI_ASSEMBLE.debug
[ 85%] Built target obj_multigrid.inst
[ 85%] Built target obj_multigrid.debug
[ 90%] Built target obj_tbb.debug
[ 94%] Built target obj_umfpack_L_UMFPACK.debug
[ 94%] Built target obj_amd_global.debug
[ 96%] Built target obj_amd_long.debug
[ 98%] Built target obj_amd_int.debug
[ 98%] Built target obj_algorithms.inst
[100%] Built target obj_algorithms.debug
[100%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target affinity.debug
[100%] Building CXX object
tests/quick_tests/CMakeFiles/affinity.debug.dir/affinity.cc.o
[100%] Linking CXX executable affinity.debug
[100%] Built target affinity.debug
Scanning dependencies of target affinity.debug.run
affinity.debug: RUN failed. Output:
dyld: Library not loaded: libmsqutil.12.dylib
Referenced from:
/Users/yaakobioy/dealii/dealii-8-4-1/dealii-8-4-1_Build/tests/quick_tests/./affinity.debug
Reason: image not found
affinity.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/Users/yaakobioy/dealii/dealii-8-4-1/dealii-8-4-1_Source/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 4: tbb.debug
4/4 Test #4: tbb.debug ........................***Failed 10.63 sec
/bin/sh: line 1: 53681 Trace/BPT trap: 5 ./tbb.debug > tbb.debug-OK 2>&1
make[7]: *** [tests/quick_tests/CMakeFiles/tbb.debug.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/tbb.debug.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/tbb.debug.run.dir/rule] Error 2
make[4]: *** [tbb.debug.run] Error 2
Test tbb.debug: RUN
=============================== OUTPUT BEGIN ===============================
Scanning dependencies of target kill-tbb.debug-OK
[ 0%] Built target kill-tbb.debug-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 0%] Built target obj_opencascade.debug
[ 0%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X.debug
[ 0%] Built target obj_boost_iostreams.debug
[ 9%] Built target obj_umfpack_I_UMF.debug
[ 9%] Built target obj_boost_system.debug
[ 9%] Built target obj_umfpack_DI_TRIPLET_MAP_X.debug
[ 11%] Built target obj_umfpack_DL_ASSEMBLE.debug
[ 11%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X.debug
[ 11%] Built target obj_distributed.inst
[ 12%] Built target obj_distributed.debug
[ 18%] Built target obj_boost_serialization.debug
[ 22%] Built target obj_numerics.inst
[ 27%] Built target obj_numerics.debug
[ 35%] Built target obj_fe.inst
[ 40%] Built target obj_fe.debug
[ 42%] Built target obj_hp.inst
[ 42%] Built target obj_hp.debug
[ 46%] Built target obj_lac.inst
[ 53%] Built target obj_lac.debug
[ 55%] Built target obj_dofs.inst
[ 57%] Built target obj_dofs.debug
[ 57%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX.debug
[ 57%] Built target obj_umfpack_DL_STORE.debug
[ 57%] Built target obj_umfpack_DI_STORE.debug
[ 59%] Built target obj_umfpack_DL_TSOLVE.debug
[ 59%] Built target obj_umfpack_GENERIC.debug
[ 59%] Built target obj_muparser.debug
[ 59%] Built target obj_base.inst
[ 68%] Built target obj_base.debug
[ 72%] Built target obj_umfpack_I_UMFPACK.debug
[ 72%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX.debug
[ 72%] Built target obj_umfpack_DI_TSOLVE.debug
[ 72%] Built target obj_umfpack_DL_TRIPLET_MAP_X.debug
[ 72%] Built target obj_umfpack_DI_SOLVE.debug
[ 79%] Built target obj_umfpack_L_UMF.debug
[ 79%] Built target obj_umfpack_DL_SOLVE.debug
[ 81%] Built target obj_grid.inst
[ 83%] Built target obj_grid.debug
[ 83%] Built target obj_umfpack_DI_ASSEMBLE.debug
[ 85%] Built target obj_multigrid.inst
[ 85%] Built target obj_multigrid.debug
[ 90%] Built target obj_tbb.debug
[ 94%] Built target obj_umfpack_L_UMFPACK.debug
[ 94%] Built target obj_amd_global.debug
[ 96%] Built target obj_amd_long.debug
[ 98%] Built target obj_amd_int.debug
[ 98%] Built target obj_algorithms.inst
[100%] Built target obj_algorithms.debug
[100%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target tbb.debug
[100%] Building CXX object tests/quick_tests/CMakeFiles/tbb.debug.dir/tbb.cc.o
[100%] Linking CXX executable tbb.debug
[100%] Built target tbb.debug
Scanning dependencies of target tbb.debug.run
tbb.debug: RUN failed. Output:
dyld: Library not loaded: libmsqutil.12.dylib
Referenced from:
/Users/yaakobioy/dealii/dealii-8-4-1/dealii-8-4-1_Build/tests/quick_tests/./tbb.debug
Reason: image not found
tbb.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/Users/yaakobioy/dealii/dealii-8-4-1/dealii-8-4-1_Source/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
0% tests passed, 4 tests failed out of 4
Total Test time (real) = 51.52 sec
The following tests FAILED:
1 - step.debug (Failed)
2 - step.release (Failed)
3 - affinity.debug (Failed)
4 - tbb.debug (Failed)
[ERROR_MESSAGE]
Errors while running CTest
