Ouch ... something went wrong:
asalvad2 *~/.spack/linux* *$* *cd $SPACK_ROOT*
asalvad2 */scratch/asalvad2/spack* *$* *spack install dealii %gcc@6.2*
*==>* Error: <unknown line>: Additional properties are not allowed
('openmpi' was unexpected)
asalvad2 */scratch/asalvad2/spack* *$* *module list*
*Currently Loaded Modulefiles:*
* 1) opt_local/1.0 2) gcc/6.2.0 3)
ompi/2.0.1-gcc-6.2.0*
asalvad2 */scratch/asalvad2/spack* *$* *more ~/.spack/linux/packages.yaml *
*openmpi:*
* version: [2.0.1]*
* paths:*
* openmpi@2.0.1%gcc@6.2.0: /opt/crc/o/openmpi/2.0.1/gcc/6.2.0/eth/bin *
* buildable: False*
*Any further help?*
*Thanks*
*Alberto*
*Alberto Salvadori* Dipartimento di Ingegneria Civile, Architettura,
Territorio, Ambiente e di Matematica (DICATAM)
Universita` di Brescia, via Branze 43, 25123 Brescia
Italy
tel 030 3711239
fax 030 3711312
e-mail:
alberto.salvad...@unibs.it
web-pages:
http://m4lab.unibs.it/faculty.html
http://dicata.ing.unibs.it/salvadori
On Tue, Apr 4, 2017 at 5:25 PM, Alberto Salvadori <
alberto.salvad...@unibs.it> wrote:
> Hi Bruno,
>
> I really appreciate your help.
> I got the right location of my openmpi and just mean to double check
> before running spack. I shall therefore:
>
> 1 - create a file ~/.spack/linux/packages.yaml as follows:
>
> openmpi:
> version: [2.0.1]
> paths:
> openmpi@2.0.1%gcc@6.2.0: ...SOMEPATH...openmpi/2.0.1/gcc/6.2.0/eth/bin
> buildable: False
>
> 2 - spack install dealii %gcc@6.2
>
> Correct?
> Thanks
> Alberto
>
>
>
>
> *Alberto Salvadori* Dipartimento di Ingegneria Civile, Architettura,
> Territorio, Ambiente e di Matematica (DICATAM)
> Universita` di Brescia, via Branze 43, 25123 Brescia
> Italy
> tel 030 3711239
> fax 030 3711312
>
> e-mail:
> alberto.salvad...@unibs.it
> web-pages:
> http://m4lab.unibs.it/faculty.html
> http://dicata.ing.unibs.it/salvadori
>
> On Tue, Apr 4, 2017 at 5:11 PM, Bruno Turcksin <bruno.turck...@gmail.com>
> wrote:
>
>> 2017-04-04 16:58 GMT-04:00 Alberto Salvadori <alberto.salvad...@unibs.it
>> >:
>> > Sorry, I am a bit confused.
>> >
>> > "you need to make sure that building mpich is set to false."
>> > - where I can set "building mpich" to false? Shall I edit a file
>> > ~/.spack/packages.yaml that BTW currently I do not have?
>> Yes, you need to create the file if it doesn't exist.
>>
>> > - if so, would this be OK?
>> >
>> > spack providers mpi
>> >
>> > intel-parallel-studio@cluster:+mpi mpich@1: mpich@3:
>> mvapich2@1.9
>> > mvapich2@2.0: openmpi@1.6.5 openmpi@1.7.5: openmpi@2.0.0:
>> spectrum-mpi
>> >
>> >
>> > openmpi:
>> > version: [2.0.0]
>> > paths:
>> > openmpi@2.0.0%gcc@6.2.0: ...SOMEPATH.../m/mpich/3.2/gcc/6.2.0/bin
>> (
>> > the latter is the directory where mpic++ executable is )
>> > buildable: False
>> This looks sketchy: you say openmpi but then the path says mpich...
>> Otherwise it looks good.
>>
>> >
>> > "You need to run something like spack install dealii ^mpich %gcc@6.2"
>> > - sorry, I cannot understand this. I know I am bothering, but can you
>> please
>> > explain this a bit further?
>> spack install dealii %gcc@6.2 -> install deal.II with the gcc 6.2
>> compiler. Because you have more than one compiler on your system, you
>> need to tell spack which compiler to use.
>> spack install dealii ^mpich -> I am not sure about this one. But by
>> default, spack uses openmpi but your path says that you are using
>> mpich. Thus, you need to force spack to use mpich instead of openmpi.
>> I am not sure this is the exact command though that's why I said it
>> should look like "spack install ^mpich %gcc@6.2"
>>
>> Best,
>>
>> Bruno
>>
>> --
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see https://groups.google.com/d/fo
>> rum/dealii?hl=en
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>
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