Got it, sorry. A
*Alberto Salvadori* Dipartimento di Ingegneria Civile, Architettura, Territorio, Ambiente e di Matematica (DICATAM) Universita` di Brescia, via Branze 43, 25123 Brescia Italy tel 030 3711239 fax 030 3711312 e-mail: [email protected] web-pages: http://m4lab.unibs.it/faculty.html http://dicata.ing.unibs.it/salvadori On Tue, Apr 4, 2017 at 5:41 PM, Alberto Salvadori < [email protected]> wrote: > Ouch ... something went wrong: > > asalvad2 *~/.spack/linux* *$* *cd $SPACK_ROOT* > > asalvad2 */scratch/asalvad2/spack* *$* *spack install dealii %[email protected]* > > *==>* Error: <unknown line>: Additional properties are not allowed > ('openmpi' was unexpected) > > asalvad2 */scratch/asalvad2/spack* *$* *module list* > > *Currently Loaded Modulefiles:* > > * 1) opt_local/1.0 2) gcc/6.2.0 3) > ompi/2.0.1-gcc-6.2.0* > > asalvad2 */scratch/asalvad2/spack* *$* *more > ~/.spack/linux/packages.yaml * > > *openmpi:* > > * version: [2.0.1]* > > * paths:* > > * [email protected]%[email protected]: > /opt/crc/o/openmpi/2.0.1/gcc/6.2.0/eth/bin * > > * buildable: False* > > *Any further help?* > *Thanks* > *Alberto* > > > > *Alberto Salvadori* Dipartimento di Ingegneria Civile, Architettura, > Territorio, Ambiente e di Matematica (DICATAM) > Universita` di Brescia, via Branze 43, 25123 Brescia > Italy > tel 030 3711239 > fax 030 3711312 > > e-mail: > [email protected] > web-pages: > http://m4lab.unibs.it/faculty.html > http://dicata.ing.unibs.it/salvadori > > On Tue, Apr 4, 2017 at 5:25 PM, Alberto Salvadori < > [email protected]> wrote: > >> Hi Bruno, >> >> I really appreciate your help. >> I got the right location of my openmpi and just mean to double check >> before running spack. I shall therefore: >> >> 1 - create a file ~/.spack/linux/packages.yaml as follows: >> >> openmpi: >> version: [2.0.1] >> paths: >> [email protected]%[email protected]: ...SOMEPATH...openmpi/2.0.1/gcc/6.2.0/eth/bin >> buildable: False >> >> 2 - spack install dealii %[email protected] >> >> Correct? >> Thanks >> Alberto >> >> >> >> >> *Alberto Salvadori* Dipartimento di Ingegneria Civile, Architettura, >> Territorio, Ambiente e di Matematica (DICATAM) >> Universita` di Brescia, via Branze 43, 25123 Brescia >> Italy >> tel 030 3711239 >> fax 030 3711312 >> >> e-mail: >> [email protected] >> web-pages: >> http://m4lab.unibs.it/faculty.html >> http://dicata.ing.unibs.it/salvadori >> >> On Tue, Apr 4, 2017 at 5:11 PM, Bruno Turcksin <[email protected]> >> wrote: >> >>> 2017-04-04 16:58 GMT-04:00 Alberto Salvadori <[email protected] >>> >: >>> > Sorry, I am a bit confused. >>> > >>> > "you need to make sure that building mpich is set to false." >>> > - where I can set "building mpich" to false? Shall I edit a file >>> > ~/.spack/packages.yaml that BTW currently I do not have? >>> Yes, you need to create the file if it doesn't exist. >>> >>> > - if so, would this be OK? >>> > >>> > spack providers mpi >>> > >>> > intel-parallel-studio@cluster:+mpi mpich@1: mpich@3: >>> [email protected] >>> > [email protected]: [email protected] [email protected]: [email protected]: >>> spectrum-mpi >>> > >>> > >>> > openmpi: >>> > version: [2.0.0] >>> > paths: >>> > [email protected]%[email protected]: ...SOMEPATH.../m/mpich/3.2/gcc/6.2.0/bin >>> ( >>> > the latter is the directory where mpic++ executable is ) >>> > buildable: False >>> This looks sketchy: you say openmpi but then the path says mpich... >>> Otherwise it looks good. >>> >>> > >>> > "You need to run something like spack install dealii ^mpich %[email protected]" >>> > - sorry, I cannot understand this. I know I am bothering, but can you >>> please >>> > explain this a bit further? >>> spack install dealii %[email protected] -> install deal.II with the gcc 6.2 >>> compiler. Because you have more than one compiler on your system, you >>> need to tell spack which compiler to use. >>> spack install dealii ^mpich -> I am not sure about this one. But by >>> default, spack uses openmpi but your path says that you are using >>> mpich. Thus, you need to force spack to use mpich instead of openmpi. >>> I am not sure this is the exact command though that's why I said it >>> should look like "spack install ^mpich %[email protected]" >>> >>> Best, >>> >>> Bruno >>> >>> -- >>> The deal.II project is located at http://www.dealii.org/ >>> For mailing list/forum options, see https://groups.google.com/d/fo >>> rum/dealii?hl=en >>> --- >>> You received this message because you are subscribed to the Google >>> Groups "deal.II User Group" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> For more options, visit https://groups.google.com/d/optout. >>> >> >> > -- Informativa sulla Privacy: http://www.unibs.it/node/8155 -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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