Bruno,
Many thanks for your help.
Now I reinstall used packets, and I got another Bug:
[ 16%] Building CXX object
source/numerics/CMakeFiles/obj_numerics_release.dir/data_out.cc.o
In file included from /usr/include/petsc/petscbag.h:4:0,
from /usr/include/petsc/petsc.h:5,
from
/home/feapman/dealii/include/deal.II/fe/fe_values.h:48,
from
/home/feapman/dealii/include/deal.II/hp/fe_values.h:24,
from
/home/feapman/dealii/include/deal.II/numerics/data_out_dof_data.h:30,
from
/home/feapman/dealii/include/deal.II/numerics/data_out.h:22,
from /home/feapman/dealii/source/numerics/data_out.cc:17:
/usr/include/petsc/petscsys.h:165:6: error: #error "PETSc was configured
with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h"
# error "PETSc was configured with OpenMPI but now appears to be
compiling using a non-OpenMPI mpi.h"
^~~~~
source/numerics/CMakeFiles/obj_numerics_release.dir/build.make:62: recipe
for target
'source/numerics/CMakeFiles/obj_numerics_release.dir/data_out.cc.o' failed
make[2]: ***
[source/numerics/CMakeFiles/obj_numerics_release.dir/data_out.cc.o] Error 1
CMakeFiles/Makefile2:2989: recipe for target
'source/numerics/CMakeFiles/obj_numerics_release.dir/all' failed
make[1]: *** [source/numerics/CMakeFiles/obj_numerics_release.dir/all]
Error 2
Makefile:129: recipe for target 'all' failed
make: *** [all] Error 2
I think, I don't use Petsc Option for Deal.II ...
would you let know how can I solve this new bug?
Warm regards,
Yaakov
On Monday, December 4, 2017 at 2:40:36 PM UTC+1, Bruno Turcksin wrote:
>
> Yaakov,
>
> On Monday, December 4, 2017 at 2:47:00 AM UTC-5, [email protected]
> <javascript:> wrote:
>
>> [ 77%] Linking CXX executable ../bin/step-8.release
>> ../lib/libdeal_II.so.9.0.0-pre: error: undefined reference to
>> 'Epetra_MpiComm::Epetra_MpiComm(int)'
>>
> There is a problem with Trilinos. deal.II can't link against it. Did you
> move Trilinos or change the configuration? Also if you have installed a new
> version of openmpi, I would strongly recommend that you reinstall all the
> libraries using MPI from scratch. Don't simply run make but delete the
> libraries and reconfigure and reinstall them. Otherwise the libraries may
> use different version of openmpi/mpich and it leads to weird bugs.
>
> Best,
>
> Bruno
>
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