On Wednesday, 10 October 2018 17:29:38 UTC+2, Bruno Turcksin wrote: > > Hans, > > Everything looks fine. I have a question, when you configured deal.II did > you load a Trilinos module but then when you compiled Trilinos was not > loaded? >
I never loaded a Trilinos module, we don't have it as a module. It just happens to be installed in the same directory tree as our modules. I just pointed cmake to the trilinis library, ie. cmake -DTRILINOS_DIR=/opt/uio/modules/rhel7/packages/trilinos/12.4.2/ > The other thing to try is to update cmake. cmake 2.8.12 is very old maybe > that's the cause of the problem. > So I try again with this: $ cmake --version cmake version 3.11.4 I also used the new 9.0.1 source, and the tip from Wolfgang and Matthias (-DDEAL_II_FORCE_BUNDLED_THREADS=TRUE) Linking still fails. Running make VERBOSE=1, I can see [ 85%] Linking CXX executable ../bin/step-9.release cd /opt/uio/modules/src/dealii-9.0.1/build/examples && /opt/uio/modules/packages/cmake/3.11.4/bin/cmake -E cmake_link_script CMakeFiles/step-9.release.dir/link.txt --verbose=1 And then a crazy long line I hope I can be forgiven for pasting in: /opt/uio/modules/packages/gcc/7.2.0/bin/c++ -rdynamic -Wl,--as-needed -rdynamic -fuse-ld=gold -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -pthread CMakeFiles/step-9.release.dir/step-9/step-9.cc.o -o ../bin/step-9.release -Wl,-rpath,/opt/uio/modules/src/dealii-9.0.1/build/lib:/opt/uio/modules/rhel7/packages/p4est/1.1/FAST/lib:/usr/lib64/openmpi/lib:/opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib::::: ../lib/libdeal_II.so.9.0.1 /opt/uio/modules/rhel7/packages/p4est/1.1/FAST/lib/libp4est.so /opt/uio/modules/rhel7/packages/p4est/1.1/FAST/lib/libsc.so /usr/lib64/openmpi/lib/libmpi_usempi.so /usr/lib64/openmpi/lib/libmpi_mpifh.so -ldl -lz -lrt -lmetis /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libmuelu-adapters.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libmuelu-interface.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libmuelu.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libteko.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libstratimikos.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libstratimikosbelos.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libstratimikosaztecoo.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libstratimikosamesos.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libstratimikosml.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libstratimikosifpack.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libifpack2-adapters.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libifpack2.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libzoltan2.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libanasazitpetra.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libModeLaplace.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libanasaziepetra.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libanasazi.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libbelostpetra.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libbelosepetra.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libbelos.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libml.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libifpack.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libpamgen_extras.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libpamgen.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libamesos2.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libamesos.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libgaleri-xpetra.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libgaleri.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libaztecoo.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libisorropia.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libxpetra-sup.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libxpetra.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libthyratpetra.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libthyraepetraext.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libthyraepetra.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libthyracore.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libepetraext.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libtpetraext.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libtpetrainout.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libtpetra.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libkokkostsqr.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libtpetrakernels.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libtpetraclassiclinalg.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libtpetraclassicnodeapi.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libtpetraclassic.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libtriutils.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libzoltan.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libepetra.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libsacado.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/librtop.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libteuchoskokkoscomm.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libteuchoskokkoscompat.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libteuchosremainder.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libteuchosnumerics.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libteuchoscomm.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libteuchosparameterlist.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libteuchoscore.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libkokkosalgorithms.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libkokkoscontainers.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libkokkoscore.so /opt/uio/modules/rhel7/packages/trilinos/12.4.2/lib/libgtest.so -llapack -lblas /usr/lib64/openmpi/lib/libmpi_cxx.so -larpack -lgsl -lgslcblas -lnetcdf_c++ -lnetcdf -lopenblas -lgfortran -lquadmath -lm -lc -lgcc_s -lgcc /usr/lib64/openmpi/lib/libmpi.so This gives the error: ../lib/libdeal_II.so.9.0.1: error: undefined reference to 'Ifpack::Create(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, Epetra_RowMatrix*, int, bool)' ../lib/libdeal_II.so.9.0.1: error: undefined reference to 'ML_Epetra::SetDefaults(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, Teuchos::ParameterList&, int*, double*, bool)' ../lib/libdeal_II.so.9.0.1: error: undefined reference to 'Epetra_Object::ReportError(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, int) const' ../lib/libdeal_II.so.9.0.1: error: undefined reference to 'Teuchos::mpiErrorCodeToString[abi:cxx11](int)' ../lib/libdeal_II.so.9.0.1: error: undefined reference to 'MueLu::Level::DeclareInput(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, MueLu::FactoryBase const*, MueLu::FactoryBase const*)' ../lib/libdeal_II.so.9.0.1: error: undefined reference to 'Teuchos::StrUtils::printLines(std::ostream&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' etc etc etc etc..... Funny. It looks to me as if all the trilinos libraries are presented to the linker. But perhaps the order is wrong or something? Thanks for your effort. Does the above make any sense to you? Regards, Hans Peter Verne IT staff - Dept. of Geosciences University of Oslo -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. For more options, visit https://groups.google.com/d/optout.
