Hi Hans,
I also encounter the same issue, did it get resolved? Thanks.
Will
On Wednesday, October 10, 2018 at 5:52:03 AM UTC-7, Hans Peter Verne wrote:
>
> I have compiled deal.II 8.4.1 earlier, but version 9.0.0 gets me in a
> pickle.
>
> My system is RedHat Enterprise Linux, version 7.5
>
> I think I meet all the requirements:
>
> $ cmake --version
> cmake version 2.8.12.2
>
> $ make --version
> GNU Make 3.82
>
> $ gcc --version
> gcc (GCC) 7.2.0
>
> I unpack the archive, creates a "build" subdirectory.
>
> cmake runs fine, I use the following command line (split for readability):
>
> cmake -DCMAKE_INSTALL_PREFIX=/opt/uio/modules/rhel7/packages/dealii/9.0.0\
> -DP4EST_DIR=/opt/uio/modules/rhel7/packages/p4est/1.1/ \
> -DDEAL_II_WITH_P4EST=ON -DDEAL_II_WITH_MPI=ON \
>
> -DTRILINOS_DIR=/opt/uio/modules/rhel7/packages/trilinos/12.4.2/ \
> ..
>
> But "make" then produces the following error:
>
> [ 38%] Building CXX object
> source/sundials/CMakeFiles/obj_sundials_release.dir/arkode.cc.o
> In file included from /usr/include/tbb/enumerable_thread_specific.h:32:0,
> from
> /opt/uio/modules/src/dealii-9.0.0/include/deal.II/base/thread_local_storage.h:23,
> from
> /opt/uio/modules/src/dealii-9.0.0/include/deal.II/base/logstream.h:22,
> from
> /opt/uio/modules/src/dealii-9.0.0/include/deal.II/lac/vector_memory.h:22,
> from
> /opt/uio/modules/src/dealii-9.0.0/include/deal.II/lac/lapack_full_matrix.h:24,
> from
> /opt/uio/modules/src/dealii-9.0.0/include/deal.II/base/array_view.h:22,
> from
> /opt/uio/modules/src/dealii-9.0.0/include/deal.II/base/mpi.h:20,
> from
> /opt/uio/modules/src/dealii-9.0.0/include/deal.II/sundials/arkode.h:20,
> from
> /opt/uio/modules/src/dealii-9.0.0/source/sundials/arkode.cc:17:
> /usr/include/tbb/concurrent_vector.h: In member function
> ‘tbb::concurrent_vector<T, A>::iterator tbb::concurrent_vector<T,
> A>::grow_by(tbb::concurrent_vector<T, A>::size_type)’:
> /usr/include/tbb/concurrent_vector.h:667:38: error: operands to ?: have
> different types ‘tbb::internal::concurrent_vector_base_v3::size_type {aka
> long unsigned int}’ and ‘tbb::atomic<long unsigned int>’
> return iterator(*this, delta ? internal_grow_by( delta,
> sizeof(T), &initialize_array, NULL ) : my_early_size);
>
> ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/tbb/concurrent_vector.h:667:38: note: and each type can be
> converted to the other
> /usr/include/tbb/concurrent_vector.h: In member function
> ‘tbb::concurrent_vector<T, A>::iterator tbb::concurrent_vector<T,
> A>::grow_by(tbb::concurrent_vector<T, A>::size_type,
> tbb::concurrent_vector<T, A>::const_reference)’:
> /usr/include/tbb/concurrent_vector.h:680:38: error: operands to ?: have
> different types ‘tbb::internal::concurrent_vector_base_v3::size_type {aka
> long unsigned int}’ and ‘tbb::atomic<long unsigned int>’
> return iterator(*this, delta ? internal_grow_by( delta,
> sizeof(T), &initialize_array_by, static_cast<const void*>(&t) ) :
> my_early_size);
>
> ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/tbb/concurrent_vector.h:680:38: note: and each type can be
> converted to the other
> make[2]: ***
> [source/sundials/CMakeFiles/obj_sundials_release.dir/arkode.cc.o] Error 1
> make[1]: *** [source/sundials/CMakeFiles/obj_sundials_release.dir/all]
> Error 2
>
> Apparently an error in the system file concurrent_vector.h, or perhaps some
> inconsistency with expected types? (I'm not a c++ programmer)
>
> I can find the corresponding package file:
>
> $ rpm -qf /usr/include/tbb/concurrent_vector.h
> tbb-devel-4.1-9.20130314.el7.x86_64
>
> I can force the build system to use the tbb that's bundled with the deal.ii
> sources by uninstalling tbb-devel (and OCE-devel by dependency), but it
> seems a harsh cure.
>
> Still, doing that, I can move on. Next problem:
>
> [ 92%] Building CXX object
> examples/CMakeFiles/step-13.release.dir/step-13/step-13.cc.o
> Linking CXX executable ../bin/step-10.release
> ../lib/libdeal_II.so.9.0.0: error: undefined reference to
> 'Ifpack::Create(std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> >, Epetra_RowMatrix*, int, bool)'
> ../lib/libdeal_II.so.9.0.0: error: undefined reference to
> 'ML_Epetra::SetDefaults(std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, Teuchos::ParameterList&,
> int*, double*, bool)'
> ../lib/libdeal_II.so.9.0.0: error: undefined reference to
> 'Epetra_Object::ReportError(std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, int) const'
> ../lib/libdeal_II.so.9.0.0: error: undefined reference to
> 'Teuchos::mpiErrorCodeToString[abi:cxx11](int)'
> ../lib/libdeal_II.so.9.0.0: error: undefined reference to
> 'MueLu::Level::DeclareInput(std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > const&, MueLu::FactoryBase
> const*, MueLu::FactoryBase const*)'
> ../lib/libdeal_II.so.9.0.0: error: undefined reference to
> 'Teuchos::StrUtils::printLines(std::ostream&,
> std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > const&, std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > const&)'
> etc etc ad nauseam
>
> This seems trilinos-related, but I have no idea how to go on from here.
> I googled a bit, but found no workable suggestions.
>
> I have trilinos 12.4.2 (as seen in the cmake command), it worked fine with
> deal.ii 8.4., and is apparently within the required version range.
>
> Any suggestions on how to resolve this? I'll be happy to try out
> things and supply more sample output, if needed.
>
>
> Regards,
> Hans Peter Verne
> IT staff - Dept. of Geosciences
> University of Oslo
>
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
---
You received this message because you are subscribed to the Google Groups
"deal.II User Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
For more options, visit https://groups.google.com/d/optout.
