Dear all,
In order to make install the deal.II, I load all the necessary modules
first so that I have this
[chueh5851a@clogin2 build]$ module list
Currently Loaded Modulefiles:
1) blacs/openmpi/gcc/64/1.1patch03 4) scalapack/openmpi/gcc/64/2.0.2
7) mlib/OpenBLAS-0.2.20
2) lapack/gcc/64/3.7.0 5) blas/gcc/64/3.7.0
8) gcc/6.3.0
3) mpi/openmpi-3.0.0/intel2018u1 6) openmpi/gcc/64/1.10.4
9) openmpi/open64/64/1.10.3
Then I get an error after I type this.
[chueh5851a@clogin2 build]$ /usr/bin/cmake3
-DCMAKE_INSTALL_PREFIX=/home/chueh5851a/software/dealii
-DP4EST_DIR=/home/chueh5851a/software/p4est-2.0/FAST
-DTRILINOS_DIR=/home/chueh5851a/software/Trilinos -D
DEAL_II_WITH_MPI:BOOL=ON -D DEAL_II_WITH_THREADS:BOOL=ON -D
DEAL_II_WITH_UMFPACK:BOOL=ON -D DEAL_II_WITH_TRILINOS:BOOL=ON -D
DEAL_II_WITH_PETSC:BOOL=OFF -D DEAL_II_WITH_SLEPC:BOOL=OFF `pwd`/..
Basically, what the error is caused by not finding MPI (see the error
below). But I already load the necessary modules including MPI already.
Does anyone help me out?
....
-- Include
/home/chueh5851a/software/dealii/cmake/checks/check_01_cxx_features.cmake
-- DEAL_II_WITH_CXX14 successfully set up
--
-- Include
/home/chueh5851a/software/dealii/cmake/checks/check_02_compiler_features.cmake
--
-- Include
/home/chueh5851a/software/dealii/cmake/checks/check_02_system_features.cmake
--
-- Include
/home/chueh5851a/software/dealii/cmake/checks/check_03_compiler_bugs.cmake
--
-- Include
/home/chueh5851a/software/dealii/cmake/configure/configure_1_cuda.cmake
-- DEAL_II_WITH_CUDA is set to off.
--
-- Include
/home/chueh5851a/software/dealii/cmake/configure/configure_1_lapack.cmake
-- A library with LAPACK API found.
-- LAPACK_LIBRARIES:
/usr/lib64/liblapack.so;/usr/lib64/libblas.so;/usr/lib64/libblas.so;gfortran;m;gcc_s;gcc;quadmath;m;gcc_s;gcc;c;gcc_s;gcc
-- LAPACK_LINKER_FLAGS:
-- Found LAPACK
-- DEAL_II_WITH_LAPACK successfully set up with external dependencies.
--
-- Include
/home/chueh5851a/software/dealii/cmake/configure/configure_1_mpi.cmake
-- Could NOT find MPI_C (missing: MPI_C_WORKS)
-- Could NOT find MPI_CXX (missing: MPI_CXX_WORKS)
-- Could NOT find MPI_Fortran (missing: MPI_Fortran_WORKS)
-- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND MPI_Fortran_FOUND)
-- Performing Test MPI_HAVE_MPI_SEEK_SET
-- Performing Test MPI_HAVE_MPI_SEEK_SET - Failed
-- MPI_MPI_H not found! Call:
-- FIND_FILE(MPI_MPI_H NAMES mpi.h HINTS)
-- MPI_VERSION: 0.0
-- MPI_LIBRARIES:
/pkg/openmpi/3.0.0/intel/2018_u1/lib64/libmpi.so;/pkg/openmpi/3.0.0/intel/2018_u1/lib64/libmpi_usempif08.so;/pkg/openmpi/3.0.0/intel/2018_u1/lib64/libmpi_usempi_ignore_tkr.so;/pkg/openmpi/3.0.0/intel/2018_u1/lib64/libmpi_mpifh.so;/pkg/openmpi/3.0.0/intel/2018_u1/lib64/libmpi.so;/pkg/openmpi/3.0.0/intel/2018_u1/lib64/libmpi.so
-- MPI_INCLUDE_DIRS:
-- MPI_USER_INCLUDE_DIRS:
-- MPI_CXX_FLAGS:
-- MPI_LINKER_FLAGS: -Wl,-rpath -Wl,/opt/pbs/lib -Wl,-rpath
-Wl,/usr/lib64 -Wl,-rpath -Wl,/pkg/openmpi/3.0.0/intel/2018_u1/lib64
-Wl,--enable-new-dtags -L/opt/pbs/lib -L/usr/lib64 -pthread
-- Could NOT find MPI
-- DEAL_II_WITH_MPI has unmet external dependencies.
CMake Error at cmake/configure/configure_1_mpi.cmake:84 (MESSAGE):
Could not find any suitable mpi library!
Please ensure that an mpi library is installed on your computer
and set CMAKE_CXX_COMPILER to the appropriate mpi wrappers:
$ CXX=".../mpicxx" cmake <...>
$ cmake -DCMAKE_CXX_COMPILER=".../mpicxx" <...>
Or with additional C and Fortran wrappers (recommended!):
$ CC=".../mpicc" CXX=".../mpicxx" F90=".../mpif90" cmake <...>
$ cmake -DCMAKE_C_COMPILER=".../mpicc"\
-DCMAKE_CXX_COMPILER=".../mpicxx"\
-DCMAKE_Fortran_COMPILER=".../mpif90"\
<...>
Call Stack (most recent call first):
build/CMakeFiles/CMakeTmp/evaluate_expression.tmp:1
(FEATURE_MPI_ERROR_MESSAGE)
cmake/macros/macro_evaluate_expression.cmake:30 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:267 (EVALUATE_EXPRESSION)
cmake/configure/configure_1_mpi.cmake:101 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:124 (VERBOSE_INCLUDE)
-- Configuring incomplete, errors occurred!
See also
"/home/chueh5851a/software/dealii/build/CMakeFiles/CMakeOutput.log".
See also "/home/chueh5851a/software/dealii/build/CMakeFiles/CMakeError.log".
--
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