Hi all,
I'm having trouble running any of the exercises. Installation was
successful, and all the quicktests pass.
When I run
cmake .
from the example directory inside the install location (Or even when I give
the path explicitly) I see that it finds deal.II
# Project step-1 set up with deal.II-9.1.0-pre found at
# /home/kylew/local/deal.II
I'm then able to compile just fine, but when I run the resulting executable
i get the following error
./step-1: error while loading shared libraries: libdeal_II.so.9.1.0-pre:
cannot open shared object file: No such file or directory
The already existing step-1.debug and step-1.release both work fine. I've
attached my install script, the install details, the Terminal output of the
above and the CMakeOutput from examples/step-1/CMakeFiles directory.
Thanks,
Kyle Williams
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
---
You received this message because you are subscribed to the Google Groups
"deal.II User Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to dealii+unsubscr...@googlegroups.com.
For more options, visit https://groups.google.com/d/optout.
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/kylew/local/deal.II
# CMAKE_SOURCE_DIR: /home/kylew/servers/storage/deal.II
# (version 9.1.0-pre, shortrev a998e81498)
# CMAKE_BINARY_DIR: /home/kylew/servers/storage/deal.II-build
# CMAKE_CXX_COMPILER: GNU 8.2.1 on platform Linux x86_64
# /usr/bin/c++
# CMAKE_C_COMPILER: /usr/bin/cc
# CMAKE_Fortran_COMPILER: /usr/bin/gfortran
# CMAKE_GENERATOR: Unix Makefiles
#
# Base configuration (prior to feature configuration):
# DEAL_II_CXX_FLAGS: -pedantic -fPIC -Wall -Wextra
-Woverloaded-virtual -Wpointer-arith -Wsign-compare -Wsuggest-override -Wswitch
-Wsynth -Wwrite-strings -Wno-placement-new -Wno-deprecated-declarations
-Wno-literal-suffix -Wno-psabi -Wno-class-memaccess -fopenmp-simd -std=c++17
# DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -funroll-all-loops
-fstrict-aliasing -Wno-unused-local-typedefs
# DEAL_II_CXX_FLAGS_DEBUG: -O0 -ggdb -Wa,--compress-debug-sections
# DEAL_II_LINKER_FLAGS: -Wl,--as-needed -rdynamic -fuse-ld=gold
# DEAL_II_LINKER_FLAGS_RELEASE:
# DEAL_II_LINKER_FLAGS_DEBUG: -ggdb
# DEAL_II_DEFINITIONS:
# DEAL_II_DEFINITIONS_RELEASE:
# DEAL_II_DEFINITIONS_DEBUG: DEBUG
# DEAL_II_USER_DEFINITIONS:
# DEAL_II_USER_DEFINITIONS_REL:
# DEAL_II_USER_DEFINITIONS_DEB: DEBUG
# DEAL_II_INCLUDE_DIRS
# DEAL_II_USER_INCLUDE_DIRS:
# DEAL_II_BUNDLED_INCLUDE_DIRS:
# DEAL_II_LIBRARIES:
# DEAL_II_LIBRARIES_RELEASE:
# DEAL_II_LIBRARIES_DEBUG:
# DEAL_II_COMPILER_VECTORIZATION_LEVEL: 1
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ADOLC = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# ( DEAL_II_WITH_ASSIMP = OFF )
# DEAL_II_WITH_BOOST set up with external dependencies
# BOOST_VERSION = 1.66.0
# BOOST_CXX_FLAGS = -Wno-unused-local-typedefs
# BOOST_DEFINITIONS = BOOST_NO_AUTO_PTR
# BOOST_USER_DEFINITIONS = BOOST_NO_AUTO_PTR
# BOOST_INCLUDE_DIRS = /usr/include
# BOOST_USER_INCLUDE_DIRS = /usr/include
# BOOST_LIBRARIES =
/usr/lib64/libboost_iostreams.so;/usr/lib64/libboost_serialization.so;/usr/lib64/libboost_system.so;/usr/lib64/libboost_thread.so;/usr/lib64/libboost_regex.so;/usr/lib64/libboost_chrono.so;/usr/lib64/libboost_date_time.so;/usr/lib64/libboost_atomic.so
# DEAL_II_WITH_COMPLEX_VALUES = ON
# ( DEAL_II_WITH_CUDA = OFF )
# DEAL_II_WITH_CXX14 = ON
# DEAL_II_WITH_CXX17 = ON
# ( DEAL_II_WITH_GMSH = OFF )
# ( DEAL_II_WITH_GSL = OFF )
# ( DEAL_II_WITH_HDF5 = OFF )
# DEAL_II_WITH_LAPACK set up with external dependencies
# LAPACK_WITH_64BIT_BLAS_INDICES = OFF
# LAPACK_LINKER_FLAGS =
# LAPACK_LIBRARIES =
/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;gcc_s;gcc
# ( DEAL_II_WITH_METIS = OFF )
# DEAL_II_WITH_MPI set up with external dependencies
# MPI_VERSION = 3.1
# MPI_C_COMPILER = /usr/lib64/openmpi/bin/mpicc
# MPI_CXX_COMPILER = /usr/lib64/openmpi/bin/mpicxx
# MPI_Fortran_COMPILER = /usr/lib64/openmpi/bin/mpif90
# MPI_CXX_FLAGS = -pthread
# MPI_LINKER_FLAGS = -Wl,-rpath -Wl,/usr/lib64/openmpi/lib
-Wl,--enable-new-dtags -pthread
# MPI_INCLUDE_DIRS = /usr/include/openmpi-x86_64
# MPI_USER_INCLUDE_DIRS = /usr/include/openmpi-x86_64
# MPI_LIBRARIES =
/usr/lib64/openmpi/lib/libmpi_cxx.so;/usr/lib64/openmpi/lib/libmpi_usempif08.so;/usr/lib64/openmpi/lib/libmpi_usempi_ignore_tkr.so;/usr/lib64/openmpi/lib/libmpi_mpifh.so;/usr/lib64/openmpi/lib/libmpi.so
# DEAL_II_WITH_MUPARSER set up with bundled packages
# MUPARSER_BUNDLED_INCLUDE_DIRS =
/home/kylew/servers/storage/deal.II/bundled/muparser_v2_2_4//include
# ( DEAL_II_WITH_NANOFLANN = OFF )
# ( DEAL_II_WITH_NETCDF = OFF )
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# DEAL_II_WITH_P4EST set up with external dependencies
# P4EST_VERSION = 2.0
# P4EST_DIR = /home/kylew/local/p4est
# P4EST_INCLUDE_DIRS = /home/kylew/local/p4est/FAST/include
# P4EST_USER_INCLUDE_DIRS = /home/kylew/local/p4est/FAST/include
# P4EST_LIBRARIES =
optimized;/home/kylew/local/p4est/FAST/lib/libp4est.so;/home/kylew/local/p4est/FAST/lib/libsc.so;debug;/home/kylew/local/p4est/DEBUG/lib/libp4est.so;/home/kylew/local/p4est/DEBUG/lib/libsc.so;general;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;gcc_s;gcc;/usr/lib64/openmpi/lib/libmpi.so
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SCALAPACK = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# ( DEAL_II_WITH_SUNDIALS = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# THREADS_CXX_FLAGS = -Wno-parentheses
# THREADS_LINKER_FLAGS = -pthread
# THREADS_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_USER_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_BUNDLED_INCLUDE_DIRS =
/home/kylew/servers/storage/deal.II/bundled/tbb-2018_U2/include
# THREADS_LIBRARIES = dl
# ( DEAL_II_WITH_TRILINOS = OFF )
# DEAL_II_WITH_UMFPACK set up with bundled packages
# UMFPACK_BUNDLED_INCLUDE_DIRS =
/home/kylew/servers/storage/deal.II/bundled/umfpack/UMFPACK/Include;/home/kylew/servers/storage/deal.II/bundled/umfpack/AMD/Include
# DEAL_II_WITH_ZLIB set up with external dependencies
# ZLIB_VERSION = 1.2.11
# ZLIB_INCLUDE_DIRS = /usr/include
# ZLIB_LIBRARIES = /usr/lib64/libz.so
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PYTHON_BINDINGS = OFF )
#
###
rm -rf $HOME/local/deal.II/*
cmake \
-D CMAKE_INSTALL_PREFIX=$HOME/local/deal.II \
-D DEAL_II_WITH_MPI=ON \
-D DEAL_II_WITH_P4EST=ON \
-D P4EST_DIR=$HOME/local/p4est \
-D DEAL_II_WITH_GSL=OFF \
../deal.II
make -j4 install
make -j4 test
-- The C compiler identification is GNU 8.2.1
-- The CXX compiler identification is GNU 8.2.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Autopilot invoked
###
#
# Project step-1 set up with deal.II-9.1.0-pre found at
# /home/kylew/local/deal.II
#
# CMAKE_BUILD_TYPE: Debug
#
# You can now run
# $ make - to compile and link the program
# $ make run - to (compile, link and) run the program
#
# $ make debug - to switch the build type to 'Debug'
# $ make release - to switch the build type to 'Release'
#
# $ make edit_cache - to change (cached) configuration variables
# and rerun the configure and generate phases of
CMake
#
# $ make strip_comments - to strip the source files in this
# directory off their comments; this is
irreversible
# $ make clean - to remove the generated executable as well as
# all intermediate compilation files
# $ make runclean - to remove all output generated by the program
# $ make distclean - to clean the directory from _all_ generated
# files (includes clean, runclean and the removal
# of the generated build system)
# $ make info - to view this message again
#
# Have a nice day!
#
###
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Scanning dependencies of target step-1
[ 33%] Building CXX object CMakeFiles/step-1.dir/step-1.cc.o
[ 66%] Linking CXX executable step-1
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Feature record: CXX_FEATURE:1cxx_auto_type
Feature record: CXX_FEATURE:1cxx_binary_literals
Feature record: CXX_FEATURE:1cxx_constexpr
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Feature record: CXX_FEATURE:1cxx_default_function_template_args
Feature record: CXX_FEATURE:1cxx_defaulted_functions
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Feature record: CXX_FEATURE:1cxx_variable_templates
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Feature record: CXX_FEATURE:1cxx_variadic_templates
Detecting CXX [-std=c++17] compiler features compiled with the following output:
Change Dir: /home/kylew/local/deal.II/examples/step-1/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_d1167/fast"
/usr/bin/gmake -f CMakeFiles/cmTC_d1167.dir/build.make
CMakeFiles/cmTC_d1167.dir/build
gmake[1]: Entering directory
'/home/kylew/local/deal.II/examples/step-1/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_d1167.dir/feature_tests.cxx.o
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/home/kylew/local/deal.II/examples/step-1/CMakeFiles/feature_tests.cxx
Linking CXX executable cmTC_d1167
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_d1167.dir/link.txt
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/usr/bin/c++ -rdynamic CMakeFiles/cmTC_d1167.dir/feature_tests.cxx.o -o
cmTC_d1167
gmake[1]: Leaving directory
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Feature record: CXX_FEATURE:1cxx_aggregate_default_initializers
Feature record: CXX_FEATURE:1cxx_alias_templates
Feature record: CXX_FEATURE:1cxx_alignas
Feature record: CXX_FEATURE:1cxx_alignof
Feature record: CXX_FEATURE:1cxx_attributes
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Feature record: CXX_FEATURE:1cxx_auto_type
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Feature record: CXX_FEATURE:1cxx_default_function_template_args
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Detecting CXX [-std=c++14] compiler features compiled with the following output:
Change Dir: /home/kylew/local/deal.II/examples/step-1/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_b83f1/fast"
/usr/bin/gmake -f CMakeFiles/cmTC_b83f1.dir/build.make
CMakeFiles/cmTC_b83f1.dir/build
gmake[1]: Entering directory
'/home/kylew/local/deal.II/examples/step-1/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_b83f1.dir/feature_tests.cxx.o
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/home/kylew/local/deal.II/examples/step-1/CMakeFiles/feature_tests.cxx
Linking CXX executable cmTC_b83f1
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_b83f1.dir/link.txt
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/usr/bin/c++ -rdynamic CMakeFiles/cmTC_b83f1.dir/feature_tests.cxx.o -o
cmTC_b83f1
gmake[1]: Leaving directory
'/home/kylew/local/deal.II/examples/step-1/CMakeFiles/CMakeTmp'
Feature record: CXX_FEATURE:1cxx_aggregate_default_initializers
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Detecting CXX [-std=c++11] compiler features compiled with the following output:
Change Dir: /home/kylew/local/deal.II/examples/step-1/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_96ab6/fast"
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gmake[1]: Entering directory
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Building CXX object CMakeFiles/cmTC_96ab6.dir/feature_tests.cxx.o
/usr/bin/c++ -std=c++11 -o CMakeFiles/cmTC_96ab6.dir/feature_tests.cxx.o -c
/home/kylew/local/deal.II/examples/step-1/CMakeFiles/feature_tests.cxx
Linking CXX executable cmTC_96ab6
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/usr/bin/c++ -rdynamic CMakeFiles/cmTC_96ab6.dir/feature_tests.cxx.o -o
cmTC_96ab6
gmake[1]: Leaving directory
'/home/kylew/local/deal.II/examples/step-1/CMakeFiles/CMakeTmp'
Feature record: CXX_FEATURE:0cxx_aggregate_default_initializers
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Feature record: CXX_FEATURE:1cxx_unicode_literals
Feature record: CXX_FEATURE:1cxx_uniform_initialization
Feature record: CXX_FEATURE:1cxx_unrestricted_unions
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Feature record: CXX_FEATURE:0cxx_variable_templates
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Detecting CXX [-std=c++98] compiler features compiled with the following output:
Change Dir: /home/kylew/local/deal.II/examples/step-1/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_3ff10/fast"
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CMakeFiles/cmTC_3ff10.dir/build
gmake[1]: Entering directory
'/home/kylew/local/deal.II/examples/step-1/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_3ff10.dir/feature_tests.cxx.o
/usr/bin/c++ -std=c++98 -o CMakeFiles/cmTC_3ff10.dir/feature_tests.cxx.o -c
/home/kylew/local/deal.II/examples/step-1/CMakeFiles/feature_tests.cxx
Linking CXX executable cmTC_3ff10
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/usr/bin/c++ -rdynamic CMakeFiles/cmTC_3ff10.dir/feature_tests.cxx.o -o
cmTC_3ff10
gmake[1]: Leaving directory
'/home/kylew/local/deal.II/examples/step-1/CMakeFiles/CMakeTmp'
Feature record: CXX_FEATURE:0cxx_aggregate_default_initializers
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Feature record: CXX_FEATURE:0cxx_unicode_literals
Feature record: CXX_FEATURE:0cxx_uniform_initialization
Feature record: CXX_FEATURE:0cxx_unrestricted_unions
Feature record: CXX_FEATURE:0cxx_user_literals
Feature record: CXX_FEATURE:0cxx_variable_templates
Feature record: CXX_FEATURE:0cxx_variadic_macros
Feature record: CXX_FEATURE:0cxx_variadic_templates
