Hi, I returned to this today and using the installed PETSc module (which links against mkl_blacs_intelmpi_lp64 [not ilp]), setting the paths for the BLAS_DIR and LAPACK_DIR CMake variables in dealii.package, allowed for a complete installation and passing the quick_tests. Thanks Bruno ( and also at FZJ to Lucas and Marc for their advice), Best, Sean
On Thursday, February 14, 2019 at 5:04:17 PM UTC+1, Sean McGovern wrote: > > OK. I will look into it. > Thanks, Bruno! > > On Thursday, February 14, 2019 at 4:49:35 PM UTC+1, Bruno Turcksin wrote: >> >> Sean, >> >> It looks like you need to link against blacs (mkl_blacs_intelmpi_ilp64) >> see here >> <https://software.intel.com/en-us/forums/intel-math-kernel-library/topic/698061> >> >> but I don't know where you need to add the flag in CANDI :( >> >> Best, >> >> bruno >> >> Le jeu. 14 févr. 2019 à 10:35, Sean McGovern <[email protected]> a écrit : >> >>> Hi Bruno! >>> Attached is the configuration log. >>> >>> I use MKL for petsc and p4est. >>> >>> Thanks, >>> Sean >>> >>> On Thursday, February 14, 2019 at 4:22:39 PM UTC+1, Bruno Turcksin wrote: >>>> >>>> Sean, >>>> >>>> On Thursday, February 14, 2019 at 9:48:56 AM UTC-5, Sean McGovern wrote: >>>>> >>>>> I am trying to install dealii with petsc and p4est on the cluster in >>>>> Juelich with intel 19. It has been running with intel 18. As others have >>>>> suggested, I have turned DEAL_II_WITH_CXX17=OFF, I have used the flag >>>>> "-xhost", but I run into errors relating to vectorization (ALTIVEC). I >>>>> have used the bundled tbb, and using the loaded tbb module, I get the >>>>> errors in the log attached. >>>>> >>>> This error is normal, we check for ALTIVEC which you don't have on your >>>> machine (ALTIVEC is only for IBM machine) and since we can't find >>>> altivec.h, we disable the altivec vectorization. What bothers me more is >>>> that it seems that you have a problem with MKL: >>>> >>>> /gpfs/software/juwels/stages/2018b/software/imkl/2019.0.117-ipsmpi-2018b/mkl/lib/intel64/libmkl_core.a(mkl_get_mpi_wrappers_static.o):mkl_get_mpi_wrappers.c:function >>>> mkl_serv_get_mpi_wrappers: error: undefined reference to >>>> 'MKLMPI_Get_wrappers' >>>> >>>> >>>> What's the configuration you are trying to use? >>>> >>>> Best, >>>> >>>> Bruno >>>> >>> -- >>> The deal.II project is located at http://www.dealii.org/ >>> For mailing list/forum options, see >>> https://groups.google.com/d/forum/dealii?hl=en >>> --- >>> You received this message because you are subscribed to a topic in the >>> Google Groups "deal.II User Group" group. >>> To unsubscribe from this topic, visit >>> https://groups.google.com/d/topic/dealii/plJ81xhINQ0/unsubscribe. >>> To unsubscribe from this group and all its topics, send an email to >>> [email protected]. >>> For more options, visit https://groups.google.com/d/optout. >>> >> -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. For more options, visit https://groups.google.com/d/optout.
