Hello Jan and Prof. Bangerth, Thanks for your reply. I fixed the issue by removing the package. After that, I can run step-1 by the "apt-get" version 9.1.1 and also by the git clone package (version 9.5.0). Thank you all.
On Sat, Dec 3, 2022 at 2:31 PM Jan Philipp Thiele < [email protected]> wrote: > ldconfig told you that the deal.II 9.1.1 shared object library is in > /lib/x86_64-linux-gnu/ > Additionally, there is an installation of deal.II 9.5.0-pre, which is the > current development branch of deal.II, in /usr/local > > This second one actually fits to apt-get install libdeal.ii-dev, so I'm > not 100% sure if the 9.1.1 is a proper installation, for that There would > have to be an include folder as well. > Additionally, fitting to the second installation the environment as well > as the cmake variable DEAL_II_DIR are set to /usr/local which is why cmake > only finds 9.5.0-pre. > You might try to set the cmake variable to the proper directory via -D > DEAL_II_DIR, but you'd probably have to figure out where the matching > include files are and set the variable to the parent directory of /include > > If you installed, uninstalled and installed again I would not be sure > whether the object libraries in /lib/x86_64-linux-gnu/ are still useable. > And I also think that on the first install you chose a different deal.II > version. > > I however, have never installed deal.II via apt so I don't know how to > choose the correct version there, but if it was 9.1.1 before it might be in > your Terminals call history. > Best, > Philipp > > > > On Saturday, December 3, 2022 at 6:57:56 AM UTC+1 [email protected] > wrote: > >> Hello Prof. Bangerth and developers, >> I have already installed the deal.ii library (9.1.1-9build2) by apt >> package (just by "apt-get install libdeal.ii-dev") in my ubuntu 20.04LTS >> machine. I did compilations in step-1 and step-2, same errors occur. >> The environment information is as follows: >> >> ***** >> $ ldconfig -p |grep deal >> libdeal.ii.so.9.1.1 (libc6,x86-64) => /lib/x86_64-linux-gnu/libdeal. >> ii.so.9.1.1 >> libdeal.ii.so (libc6,x86-64) => /lib/x86_64-linux-gnu/libdeal.ii.so >> libdeal.ii.g.so.9.1.1 (libc6,x86-64) => /lib/x86_64-linux-gnu/libdeal. >> ii.g.so.9.1.1 >> libdeal.ii.g.so (libc6,x86-64) => /lib/x86_64-linux-gnu/libdeal. >> ii.g.so >> >> $ export | grep deal >> declare -x DEAL_II_DIR="/usr/include/deal.II" >> declare -x PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/ >> sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/usr/ >> include/deal.II:/usr/include/deal.II" >> >> $ ls /usr/include/deal.II/ >> algorithms distributed grid matrix_free numerics >> physics >> base dofs hp meshworker opencascade >> sundials >> boost_adaptors fe integrators multigrid optimization >> differentiation gmsh lac non_matching particles >> >> $ ls /usr/local/include/deal.II/ >> algorithms cgal gmsh matrix_free opencascade >> arborx differentiation grid meshworker optimization >> base distributed hp multigrid particles >> boost_adaptors dofs integrators non_matching physics >> bundled fe lac numerics sundials >> >> $ ls /usr/local/lib/ >> cmake libdeal_II.g.so.9.5.0-pre libdeal_II.so.9.5.0-pre >> python3.8 >> libdeal_II.g.so libdeal_II.so pkgconfig >> ********** >> >> I copy the example files into another directory and run commands in >> step-2 folder: >> >> ************ >> $ cmake . >> -- Using the* deal.II-9.5.0*-pre installation found at /usr/local (*** >> PS ***: I don't know why deal.ii-9.5.0 is involved.) >> -- Include macro /usr/local/share/deal.II/macros/macro_deal_ii_add_test. >> cmake >> -- Include macro /usr/local/share/deal.II/macros/macro_deal_ii_ >> initialize_cached_variables.cmake >> -- Include macro /usr/local/share/deal.II/macros/macro_deal_ii_invoke_ >> autopilot.cmake >> -- Include macro /usr/local/share/deal.II/macros/macro_deal_ii_pickup_ >> tests.cmake >> -- Include macro /usr/local/share/deal.II/macros/macro_deal_ii_query_ >> git_information.cmake >> -- Include macro /usr/local/share/deal.II/macros/macro_deal_ii_setup_ >> target.cmake >> -- The C compiler identification is GNU 9.4.0 >> -- The CXX compiler identification is GNU 9.4.0 >> -- Check for working C compiler: /usr/bin/cc >> -- Check for working C compiler: /usr/bin/cc -- works >> -- Detecting C compiler ABI info >> -- Detecting C compiler ABI info - done >> -- Detecting C compile features >> -- Detecting C compile features - done >> -- Check for working CXX compiler: /usr/bin/c++ >> -- Check for working CXX compiler: /usr/bin/c++ -- works >> -- Detecting CXX compiler ABI info >> -- Detecting CXX compiler ABI info - done >> -- Detecting CXX compile features >> -- Detecting CXX compile features - done >> -- Autopilot invoked >> ### >> # >> # Project step-2 set up with deal.II-9.5.0-pre found at >> # /usr/local >> # >> # CMAKE_BUILD_TYPE: Debug >> # >> # You can now run >> # $ make - to compile and link the program >> # $ make run - to (compile, link and) run the program >> # >> # $ make debug - to switch the build type to 'Debug' >> # $ make release - to switch the build type to 'Release' >> # >> # $ make edit_cache - to change (cached) configuration variables >> # and rerun the configure and generate >> phases of CMake >> # >> # $ make strip_comments - to strip the source files in this >> # directory off their comments; this is >> irreversible >> # $ make clean - to remove the generated executable as >> well as >> # all intermediate compilation files >> # $ make runclean - to remove all output generated by the >> program >> # $ make distclean - to clean the directory from _all_ >> generated >> # files (includes clean, runclean and the >> removal >> # of the generated build system) >> # $ make info - to view this message again >> # >> # Have a nice day! >> # >> ### >> -- Configuring done >> -- Generating done >> -- Build files have been written to: /media/zz/CE8C7223EFB7F02F/ >> deal.ii_check/examples/step-2 >> >> $ make >> Scanning dependencies of target step-2 >> [ 50%] Building CXX object CMakeFiles/step-2.dir/step-2.cc.o >> In file included from */usr/local/include/deal.II*/base/config.h:561, >> from */usr/local/include/deal.II/*grid/tria.h:20, >> from /media/zhu/CE8C7223EFB7F02F/ >> deal.ii_check/examples/step-2/step-2.cc:23: >> */usr/local/include/deal.II/base/numbers.h:28:10: fatal error: >> Kokkos_Macros.hpp: No such file or directory* >> 28 | #include <Kokkos_Macros.hpp> >> | ^~~~~~~~~~~~~~~~~~~ >> compilation terminated. >> make[2]: *** [CMakeFiles/step-2.dir/build.make:63: >> CMakeFiles/step-2.dir/step-2.cc.o] Error 1 >> make[1]: *** [CMakeFiles/Makefile2:272: CMakeFiles/step-2.dir/all] Error 2 >> make: *** [Makefile:84: all] Error 2 >> **************** >> >> As the error shown in the above, I feel strange about another version >> 9.5.0 appearing in the compilation. I also do cmake by adding >> -DDEAL_II_DIR=/usr/local/include/deal.II or other directory like >> -DDEAL_II_DIR=/usr/include/deal.II (since the same /algorithms, >> /distributed, /grid, .. folders appear in this directory ), the error keeps >> the same. >> So in this situation, what is the reason for this error and how to solve >> it? Thank you！ >> >> PS: Maybe I forgot I have installed it at the first then remove it >> incompletely, and installed it again. But I don't remember clearly. The >> clear impression is that I only use apt-get to install the deal.ii library. >> >> Best， >> Xianyun >> > -- > The deal.II project is located at http://www.dealii.org/ > For mailing list/forum options, see > https://groups.google.com/d/forum/dealii?hl=en > --- > You received this message because you are subscribed to a topic in the > Google Groups "deal.II User Group" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/dealii/BaJRo2PDCmA/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/dealii/ae204b02-0e33-44af-8e27-c9c12a6f4ef5n%40googlegroups.com > <https://groups.google.com/d/msgid/dealii/ae204b02-0e33-44af-8e27-c9c12a6f4ef5n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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