Dear Dr. Wolfgang, Thanks for the reply!
I tried to re-install again but still, end up with the same error. However, I found that I can successfully build dealii using candi with version 9.4.0-r2 with the same .cfg file (I was using the latest version). I am not quite sure what is going on but I am happy with the result. Best Regards, Jau-Uei Chen Wolfgang Bangerth 在 2022年11月23日 星期三下午1:49:55 [UTC-6] 的信中寫道： > > > Recently, I also try to re-install dealii via candi on a Linux machine > but > > encounter the same error message (CMakeError.log is different). On the > > machine, I have the following modules: > > 1) ubt18 2) gcc/9.2 3) mkl/19.0 4) mpich2/3.2 5) phdf5/1.10.5 > 6) > > paraview/5.7.0-MPI-Linux-Python2.7 7) matlab/r2022a 8) boost/1.69.0 > 9) > > cmake/3.20.0 > > > > Please see the attachment for .log files and the candi.sh file. > > > > Any suggestion or comment is greatly appreciated. > > I don't know what exactly it is that is going wrong here, but this warning > here is suspicious: > > /usr/bin/ld: warning: libmpi.so.20, needed by > /usr/lib/x86_64-linux-gnu/libscalapack-openmpi.so, may conflict with > libmpi.so.12 > /usr/bin/ld: warning: libgfortran.so.4, needed by > /usr/lib/x86_64-linux-gnu/libscalapack-openmpi.so, may conflict with > libgfortran.so.5 > > It suggests that you have been using different versions of MPI and/or the > compiler to compile different parts of the whole system. This will not > likely > work. On cluster systems like the one you appear to be on, this may happen > if > you load different modules at different times during the compilation > process. > My suggestion would be to remove everything, make sure you put the 'module > load' commands into your .bashrc or .cshrc (so that you don't have to do > it by > hand every time), and then restart the compilation process from scratch. > > Best > W. > > > -- > ------------------------------------------------------------------------ > Wolfgang Bangerth email: [email protected] > www: http://www.math.colostate.edu/~bangerth/ > > > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/c64d9252-1d59-4927-9a2a-b8f366293f3dn%40googlegroups.com.
